PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016253001
Common NameGSBRNA2T00016253001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 294aa    MW: 32286.8 Da    PI: 9.8142
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016253001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT+eE+e l+ +v+++G+g Wk I +         +R+  ++k++w+++
  GSBRNA2T00016253001  5 KLKWTEEEEEALLAGVQKHGPGKWKNIIKDPEfadslCNRSNIDLKDKWRNL 56
                         689************************999999999989***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.352161IPR017930Myb domain
SuperFamilySSF466892.15E-16260IPR009057Homeodomain-like
SMARTSM007173.9E-10459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-14556IPR009057Homeodomain-like
PfamPF002491.8E-9556IPR001005SANT/Myb domain
CDDcd116605.88E-13757No hitNo description
SMARTSM005265.8E-18125191IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.5E-10126201IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.62E-14126206IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.016127203IPR005818Linker histone H1/H5, domain H15
PfamPF005384.1E-10129201IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGNHKLKWTE EEEEALLAGV QKHGPGKWKN IIKDPEFADS LCNRSNIDLK DKWRNLNVPP  60
DIQGSIDKVR TPKIKAAALN LAAVAAAATS TPPPSSATPS PVAPLPRSGS SDLNVDDSWN  120
TMVDAKNAPR YDGMIFEALS ALTDPNGSDV TTIFNFIEEK KHEVPPGFKR VLGSRLRRLA  180
AQGKIEKVNQ IRAGTQNFYR MNGTSFSGMR APVVARPKEV NVKPRQTNSQ RVLMVSQKEV  240
DQASGTAAFK FAEVEKNSEL VKRAAEHKER MIKLAEQAEI ILLLAEELHE ACK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.235410.0leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016253001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728591e-157AC172859.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrB023K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013726493.10.0telomere repeat-binding factor 4-like
RefseqXP_013726494.10.0telomere repeat-binding factor 4-like
SwissprotF4I7L11e-112TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A078G8N10.0A0A078G8N1_BRANA; BnaA09g44970D protein
STRINGBra030992.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-96MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]