PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00014999001
Common NameGSBRNA2T00014999001, LOC106426289
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 508aa    MW: 55827.1 Da    PI: 5.3249
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00014999001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS441.65.7e-1351465021374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsP 89 
                          lv++Ll+cAeav++++l+la+ l+++l  las+++ +m+++a+yf+e+La+r++r    +y   p+ +   ++ s++l+   + f+e++P
  GSBRNA2T00014999001 146 LVHALLACAEAVQQNNLKLADVLVKHLGLLASSQAGAMRKVATYFAEGLARRIYR----IY---PSDDVGLSSFSDTLQ---VhFYECCP 225
                          689****************************************************....55...333333222344433...34****** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                          +lkf+h+taNqaIlea++++e+vH+iD++++qGlQWpaL+qaLa Rp+gpp +R+Tg+gs  s   ++++e+g++L ++A+++gv+fef+
  GSBRNA2T00014999001 226 YLKFAHFTANQAILEAFATAEKVHVIDLGLNQGLQWPALIQALALRPGGPPDFRLTGIGS--SLTGQSIQEVGWKLGQLANAVGVNFEFK 313
                          ************************************************************..5699************************ PP

                 GRAS 180 vlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                           +v ++l+dl+ e+L++++  E++aVn+v++lhrll++++s+++    +L ++ks++P++++vveqea+hn++ Fl+rf+e+l+yys+lf
  GSBRNA2T00014999001 314 SIVLNSLSDLKQEMLEIRTgSESIAVNSVFELHRLLAHPGSIDN----ILLTIKSIKPDIITVVEQEANHNGAVFLDRFTESLHYYSSLF 399
                          *******************99******************99999....****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          dsle      s++++++++ +lgr+i n+vaceg++r+erhetl++Wr+r+++ GFk+v+++++a+kqa++ll+ ++  dgy+vee++g+
  GSBRNA2T00014999001 400 DSLEGP----SSQDRVMSELYLGRQILNLVACEGEDRVERHETLAQWRNRFTMGGFKSVSIGSYAYKQASMLLALYAgADGYKVEENEGC 485
                          ****99....89999999999********************************************************************* PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgW++rpL+++SaWr
  GSBRNA2T00014999001 486 LLLGWQTRPLIATSAWR 502
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011293.1E-3531100No hitNo description
PfamPF120411.0E-313193IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.368120481IPR005202Transcription factor GRAS
PfamPF035142.0E-132146502IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MKREHGHRET SSVKAGSSSM TANKEEAGGF DELLVVLGYK VRSSDMADVA HKLEQLEMVL  60
DDGNSHLSDD TVHYNPSDLS GWVDSLLFDL NPTCDQVIPD QDSEYELSAI PGSAAYPRGK  120
RTRTGSNSST TRSMVVLDSQ ETGVRLVHAL LACAEAVQQN NLKLADVLVK HLGLLASSQA  180
GAMRKVATYF AEGLARRIYR IYPSDDVGLS SFSDTLQVHF YECCPYLKFA HFTANQAILE  240
AFATAEKVHV IDLGLNQGLQ WPALIQALAL RPGGPPDFRL TGIGSSLTGQ SIQEVGWKLG  300
QLANAVGVNF EFKSIVLNSL SDLKQEMLEI RTGSESIAVN SVFELHRLLA HPGSIDNILL  360
TIKSIKPDII TVVEQEANHN GAVFLDRFTE SLHYYSSLFD SLEGPSSQDR VMSELYLGRQ  420
ILNLVACEGE DRVERHETLA QWRNRFTMGG FKSVSIGSYA YKQASMLLAL YAGADGYKVE  480
ENEGCLLLGW QTRPLIATSA WRFNRVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-6814150113377Protein SCARECROW
5b3h_D9e-6814150113377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.47520.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in germinating seeds and flowers and siliques. Highly expressed in inflorescences and weakly or not expressed in rosette leaves, etiolated seedlings, siliques, mature stems and roots. RGA and GAI transcripts were detected at slightly varying levels in all tissues examined. RGL2 signal was undetected, and RGL3 signal was very weak in all tissues examined (rosette leaves, seedlings, inflorescences, and siliques) except inflorescences. In the flower, it is expressed in developing ovules as well as in developing anthers throughout microspore development. {ECO:0000269|PubMed:11826301}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00014999001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated upon GA treatment.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612911.10.0PREDICTED: DELLA protein RGL1
RefseqXP_013722503.10.0DELLA protein RGL1
SwissprotQ9C8Y30.0RGL1_ARATH; DELLA protein RGL1
TrEMBLA0A078IXQ00.0A0A078IXQ0_BRANA; BnaCnng28010D protein
TrEMBLA0A0D3AND10.0A0A0D3AND1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DCS50.0A0A3P6DCS5_BRAOL; Uncharacterized protein
STRINGBo2g052880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yan A, et al.
    AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis.
    PLoS ONE, 2014. 9(1): p. e85208
    [PMID:24404203]
  3. Gallego-Giraldo C, et al.
    Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    Plant J., 2014. 79(6): p. 1020-1032
    [PMID:24961590]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  6. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  7. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  8. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]
  9. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]
  10. Zhang L,Chen L,Yu D
    Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering.
    Plant Physiol., 2018. 176(1): p. 790-803
    [PMID:29133369]