PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00014120001
Common NameGSBRNA2T00014120001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 248aa    MW: 28190.2 Da    PI: 5.3243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00014120001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-1973128155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr++  +g+WvAeIr+p++ +g  +kr +lg+f+ta +Aa a+++a+ +++g
  GSBRNA2T00014120001  73 CRFRGVRQRV-WGKWVAEIREPVNqRGgNSKRLWLGTFDTAADAALAYDRAASAMYG 128
                          689*****99.**********888777677**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1373128IPR001471AP2/ERF domain
CDDcd000185.22E-2773137No hitNo description
PROSITE profilePS5103221.90474136IPR001471AP2/ERF domain
SMARTSM003806.9E-3274142IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2074137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-2874137IPR001471AP2/ERF domain
PRINTSPR003671.7E-97586IPR001471AP2/ERF domain
PRINTSPR003671.7E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEKEHNGPNQ SSSASIEPSR RRRRAAEPVD TTLSRWVKEE EAEEGLKRTR RVQAKGSRKS  60
CMRGKGGPEN PVCRFRGVRQ RVWGKWVAEI REPVNQRGGN SKRLWLGTFD TAADAALAYD  120
RAASAMYGRY ARLNFPDGLG NGQDDEMKKT DEAESSRSYW LETCNISETG NSVVVDKKDG  180
EDYLYEDCIE LGQDKIEKLG RMADNEIVKS EEDYMFDGFE LDKGLLYNEP GYYHGGGFDP  240
YLEHFRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1875143670ATERF1
3gcc_A6e-1875143670ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.172170.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in xylem tissues, stigma, anthers and region where sepals and petals attach the peduncle. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00014120001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013748230.11e-176dehydration-responsive element-binding protein 2E-like
SwissprotO809177e-89DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBLA0A078IZ850.0A0A078IZ85_BRANA; BnaAnng13220D protein
STRINGBra005113.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.12e-81ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]