PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013903001
Common NameGSBRNA2T00013903001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 338aa    MW: 38347.4 Da    PI: 4.3672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013903001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19123172255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +g+W+AeIrdp +   ++r +lg+f taeeAa  +++a+ +l+g
  GSBRNA2T00013903001 123 KFRGVRQRP-WGKWAAEIRDPEQ---KRRLWLGTFETAEEAAVVYDNAAIRLRG 172
                          89*******.**********732...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-30122180IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21123180IPR016177DNA-binding domain
SMARTSM003802.5E-38123186IPR001471AP2/ERF domain
CDDcd000187.03E-34123179No hitNo description
PfamPF008476.9E-12123172IPR001471AP2/ERF domain
PROSITE profilePS5103223.828123180IPR001471AP2/ERF domain
PRINTSPR003674.1E-10124135IPR001471AP2/ERF domain
PRINTSPR003674.1E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MIMNMMDEEL HEYMDFRPLK YSEHKTSVTK YTKTSPETRP DSVKIVRVSV TDPYATDSSS  60
DEEEEDFLFP RRRVRRFVNE IKVEPGCNNT GVSMKERKRL SSPASDRHRP LKVSTSSGQN  120
VRKFRGVRQR PWGKWAAEIR DPEQKRRLWL GTFETAEEAA VVYDNAAIRL RGPDALTNFS  180
SEPEQPVIDK PESNITTTIT TSSTESTEDF QHVSSPTSVL NLQSSSEEIQ QPFKSAKPEP  240
EISDASWCHT GFSSGSGESE DSFMLDSTFL DNYFNESTPE FSILDQPMGQ LFLENDVFSD  300
TFLDEEIMMN IGDEFTKDIG SVFSEFDDSL ISDLLVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-22122179159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013903001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627786.10.0PREDICTED: ethylene-responsive transcription factor CRF3
SwissprotQ9FK121e-134CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLA0A078IT670.0A0A078IT67_BRANA; BnaC03g14960D protein
STRINGBo3g022760.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-119cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  4. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]