PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013607001
Common NameGSBRNA2T00013607001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 277aa    MW: 30118.4 Da    PI: 8.8102
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013607001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.1e-1851140193
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f k  + +d+l +gr +l+ +f++++g+ k++  ++tl  ++g +W+v+l+ + ++++  l++GWkeF+kangLk+g+ ++++  + +++
  GSBRNA2T00013607001  51 FMKLKLAHDSLIRGRQYLSVPFMRANGMTKPG--MITLVGKDGVKWKVNLKEEASGSALCLGTGWKEFAKANGLKTGEYFTLESAW-KNE 137
                          778889999*****************998666..8***************88888888************************9666.444 PP

                          ..E CS
                   B3  91 elv 93 
                           ++
  GSBRNA2T00013607001 138 IPM 140
                          445 PP
2B339.41.1e-121872731099
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                            k + l lp +f++++g+k+ +  t+t+  ++g +W   l      g++  + GW++F++ang+k g+++ + l+++ +++ + +k++ 
  GSBRNA2T00013607001 187 DVKACTLNLPSEFVTAIGIKELG--TITFLGKDGMKWWGCL--LSENGSVAVGIGWRNFCEANGVKLGESFSLVLINEeEDTGPIFKFCP 272
                          456689***********988544..9********9999888..666677999************************88899999999997 PP

                          S CS
                   B3  99 k 99 
                          +
  GSBRNA2T00013607001 273 N 273
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-1745141IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-1848144IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-1849143No hitNo description
PfamPF023621.9E-1651140IPR003340B3 DNA binding domain
SMARTSM010191.0E-2651147IPR003340B3 DNA binding domain
PROSITE profilePS5086313.67651147IPR003340B3 DNA binding domain
SMARTSM010192.3E-12178274IPR003340B3 DNA binding domain
PROSITE profilePS5086310.856178276IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-13179271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-13184272IPR015300DNA-binding pseudobarrel domain
PfamPF023625.3E-11187273IPR003340B3 DNA binding domain
CDDcd100171.48E-8191261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNNSEKEVKT EADSSSSDHP CPLALVTASN VRKATQKRRG RPPTSPSQKQ FMKLKLAHDS  60
LIRGRQYLSV PFMRANGMTK PGMITLVGKD GVKWKVNLKE EASGSALCLG TGWKEFAKAN  120
GLKTGEYFTL ESAWKNEIPM LSLVNTESAS DRKERGESSK AMEKESTDTS SVVQNRVVVT  180
LALETKDVKA CTLNLPSEFV TAIGIKELGT ITFLGKDGMK WWGCLLSENG SVAVGIGWRN  240
FCEANGVKLG ESFSLVLINE EEDTGPIFKF CPNSGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013607001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556919.10.0B3 domain-containing protein REM12-like
SwissprotP0CAP42e-83REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078IW320.0A0A078IW32_BRANA; BnaA04g28160D protein
STRINGBo4g154910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.19e-86B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]