PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013605001
Common NameGSBRNA2T00013605001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 475aa    MW: 54468.9 Da    PI: 10.053
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013605001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-15692197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                         ffk l     + s+ l++p  f+++++g +e   + ++++  s  +Wevk+  ++++ r  lt+GWkeF+ a++L+ gD+++F+  ++++  
  GSBRNA2T00013605001  6 FFKPL--LPGFHSH-LTIPVAFLKHIEGTNEH-HKAKMRSdASKITWEVKI--ENGR-R--LTNGWKEFALAHDLRIGDILIFR--QEKDLA 86
                         66666..5667777.********888766544.467777658889******..6666.4..9**********************..456666 PP

                         .EEEEE CS
                   B3 92 lvvkvf 97
                         ++v+++
  GSBRNA2T00013605001 87 FHVTLL 92
                         677765 PP

2B359.56e-19141224590
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           +++ +l+++ l lp++f++++g++k+++ +++l++e+ +sW++ l  ++  ++ +++++GW++F+++ngLk+g   +Fkl++r ++
  GSBRNA2T00013605001 141 YVSPATLRHDKLNLPRSFVRANGLEKRCG-DIVLMNEKCKSWTLAL--KQELCGnTYIRRGWRSFCSSNGLKTGGLYTFKLIKRGRT 224
                          567888999****************9998.****************..555555599************************986333 PP

3B369.15.9e-22275364596
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          + + + l  +rl l k+f++++ ++++++ +++l++e+g sW+++l+ +++ g +++t+GW++F++angLk+g f++Fkl++r +++lv+
  GSBRNA2T00013605001 275 FFTRSLLLYDRLDLRKSFVRANALETRCG-EIVLTNEKGTSWTLNLKQKRSCGNMYITRGWRRFCRANGLKAGCFFTFKLIQR-GGTLVL 362
                          55667777899***********9999887.****************99999999***************************95.555666 PP

                          EE CS
                   B3  95 kv 96 
                          ++
  GSBRNA2T00013605001 363 RF 364
                          55 PP

4B3598.2e-19372465196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++  +++++l+s  l lp +f+++hg++  e++++tl d++g +W  +l+ +k+s+r+ l +GW++F +an ++ g+++v+kl+++ ++
  GSBRNA2T00013605001 372 FVTLILKPSNLTSYKLFLPLHFTKRHGIN--EKTKMTLLDKNGVKWFTNLRSEKTSDRVRLVGGWQKFFEANCVEIGESIVLKLIWEGDK 459
                          566677888899999***********999..4569***************************************************9888 PP

                          ..EEEE CS
                   B3  91 elvvkv 96 
                          ++v+k+
  GSBRNA2T00013605001 460 SCVLKF 465
                          788776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.534395IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-194102IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-15492No hitNo description
Gene3DG3DSA:2.40.330.102.2E-205107IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-19695IPR003340B3 DNA binding domain
PfamPF023624.1E-111489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-19134230IPR015300DNA-binding pseudobarrel domain
CDDcd100178.28E-15135229No hitNo description
SuperFamilySSF1019363.34E-16136234IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-20137233IPR003340B3 DNA binding domain
PROSITE profilePS5086314.494137232IPR003340B3 DNA binding domain
PfamPF023621.7E-17140224IPR003340B3 DNA binding domain
PROSITE profilePS5086314.438271367IPR003340B3 DNA binding domain
SMARTSM010194.0E-24272367IPR003340B3 DNA binding domain
PfamPF023622.8E-20274364IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-18276365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-17277364IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-17290364No hitNo description
Gene3DG3DSA:2.40.330.101.6E-18367463IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-21369461IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.225372469IPR003340B3 DNA binding domain
SMARTSM010197.3E-22372469IPR003340B3 DNA binding domain
PfamPF023627.6E-18372467IPR003340B3 DNA binding domain
CDDcd100173.49E-18372465No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVIKHFFKPL LPGFHSHLTI PVAFLKHIEG TNEHHKAKMR SDASKITWEV KIENGRRLTN  60
GWKEFALAHD LRIGDILIFR QEKDLAFHVT LLGPSGCEIQ YESCSEEKNN IGNIPKKKKV  120
KKNPRKETES TLLDPSCFVA YVSPATLRHD KLNLPRSFVR ANGLEKRCGD IVLMNEKCKS  180
WTLALKQELC GNTYIRRGWR SFCSSNGLKT GGLYTFKLIK RGRTSVLRLS STDSELEEES  240
SEGDEVESLS TEPESDEGTP TNLEEEESKM RCRVFFTRSL LLYDRLDLRK SFVRANALET  300
RCGEIVLTNE KGTSWTLNLK QKRSCGNMYI TRGWRRFCRA NGLKAGCFFT FKLIQRGGTL  360
VLRFSSQFDN NFVTLILKPS NLTSYKLFLP LHFTKRHGIN EKTKMTLLDK NGVKWFTNLR  420
SEKTSDRVRL VGGWQKFFEA NCVEIGESIV LKLIWEGDKS CVLKFWSKVK HETG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013605001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140574.10.0PREDICTED: putative B3 domain-containing protein REM15 isoform X3
SwissprotO230761e-168REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A078IW250.0A0A078IW25_BRANA; BnaA04g28150D protein
STRINGBo4g154850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-150B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]