PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00013605001 | ||||||||
Common Name | GSBRNA2T00013605001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 475aa MW: 54468.9 Da PI: 10.053 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.2 | 1.9e-15 | 6 | 92 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk l + s+ l++p f+++++g +e + ++++ s +Wevk+ ++++ r lt+GWkeF+ a++L+ gD+++F+ ++++ GSBRNA2T00013605001 6 FFKPL--LPGFHSH-LTIPVAFLKHIEGTNEH-HKAKMRSdASKITWEVKI--ENGR-R--LTNGWKEFALAHDLRIGDILIFR--QEKDLA 86 66666..5667777.********888766544.467777658889******..6666.4..9**********************..456666 PP .EEEEE CS B3 92 lvvkvf 97 ++v+++ GSBRNA2T00013605001 87 FHVTLL 92 677765 PP | |||||||
2 | B3 | 59.5 | 6e-19 | 141 | 224 | 5 | 90 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++ +l+++ l lp++f++++g++k+++ +++l++e+ +sW++ l ++ ++ +++++GW++F+++ngLk+g +Fkl++r ++ GSBRNA2T00013605001 141 YVSPATLRHDKLNLPRSFVRANGLEKRCG-DIVLMNEKCKSWTLAL--KQELCGnTYIRRGWRSFCSSNGLKTGGLYTFKLIKRGRT 224 567888999****************9998.****************..555555599************************986333 PP | |||||||
3 | B3 | 69.1 | 5.9e-22 | 275 | 364 | 5 | 96 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + + + l +rl l k+f++++ ++++++ +++l++e+g sW+++l+ +++ g +++t+GW++F++angLk+g f++Fkl++r +++lv+ GSBRNA2T00013605001 275 FFTRSLLLYDRLDLRKSFVRANALETRCG-EIVLTNEKGTSWTLNLKQKRSCGNMYITRGWRRFCRANGLKAGCFFTFKLIQR-GGTLVL 362 55667777899***********9999887.****************99999999***************************95.555666 PP EE CS B3 95 kv 96 ++ GSBRNA2T00013605001 363 RF 364 55 PP | |||||||
4 | B3 | 59 | 8.2e-19 | 372 | 465 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f++ +++++l+s l lp +f+++hg++ e++++tl d++g +W +l+ +k+s+r+ l +GW++F +an ++ g+++v+kl+++ ++ GSBRNA2T00013605001 372 FVTLILKPSNLTSYKLFLPLHFTKRHGIN--EKTKMTLLDKNGVKWFTNLRSEKTSDRVRLVGGWQKFFEANCVEIGESIVLKLIWEGDK 459 566677888899999***********999..4569***************************************************9888 PP ..EEEE CS B3 91 elvvkv 96 ++v+k+ GSBRNA2T00013605001 460 SCVLKF 465 788776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.534 | 3 | 95 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-19 | 4 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.67E-15 | 4 | 92 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-20 | 5 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.6E-19 | 6 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-11 | 14 | 89 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-19 | 134 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.28E-15 | 135 | 229 | No hit | No description |
SuperFamily | SSF101936 | 3.34E-16 | 136 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.7E-20 | 137 | 233 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.494 | 137 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-17 | 140 | 224 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.438 | 271 | 367 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-24 | 272 | 367 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-20 | 274 | 364 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-18 | 276 | 365 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.9E-17 | 277 | 364 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.46E-17 | 290 | 364 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-18 | 367 | 463 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-21 | 369 | 461 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.225 | 372 | 469 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.3E-22 | 372 | 469 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-18 | 372 | 467 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.49E-18 | 372 | 465 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 475 aa Download sequence Send to blast |
MVIKHFFKPL LPGFHSHLTI PVAFLKHIEG TNEHHKAKMR SDASKITWEV KIENGRRLTN 60 GWKEFALAHD LRIGDILIFR QEKDLAFHVT LLGPSGCEIQ YESCSEEKNN IGNIPKKKKV 120 KKNPRKETES TLLDPSCFVA YVSPATLRHD KLNLPRSFVR ANGLEKRCGD IVLMNEKCKS 180 WTLALKQELC GNTYIRRGWR SFCSSNGLKT GGLYTFKLIK RGRTSVLRLS STDSELEEES 240 SEGDEVESLS TEPESDEGTP TNLEEEESKM RCRVFFTRSL LLYDRLDLRK SFVRANALET 300 RCGEIVLTNE KGTSWTLNLK QKRSCGNMYI TRGWRRFCRA NGLKAGCFFT FKLIQRGGTL 360 VLRFSSQFDN NFVTLILKPS NLTSYKLFLP LHFTKRHGIN EKTKMTLLDK NGVKWFTNLR 420 SEKTSDRVRL VGGWQKFFEA NCVEIGESIV LKLIWEGDKS CVLKFWSKVK HETG* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00013605001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140574.1 | 0.0 | PREDICTED: putative B3 domain-containing protein REM15 isoform X3 | ||||
Swissprot | O23076 | 1e-168 | REM15_ARATH; Putative B3 domain-containing protein REM15 | ||||
TrEMBL | A0A078IW25 | 0.0 | A0A078IW25_BRANA; BnaA04g28150D protein | ||||
STRING | Bo4g154850.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00260.1 | 1e-150 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|