PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012725001
Common NameGSBRNA2T00012725001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 376aa    MW: 42136.9 Da    PI: 9.4277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012725001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.63e-15231001296
                          HTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  12 ksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           ++ l +p  f+++h      +   k  +l++  s + W+vk+  ++++    lt+GW++F+ a++L++gD++vF+++g++ f  +v++
  GSBRNA2T00012725001  23 HTH-LNIPVAFFSKHvvgR--HDHVKIAKLRTyASDKNWKVKM--DGSK----LTDGWEDFAVAHDLRVGDMIVFRHEGEMVF--HVTA 100
                          444.99*********9753..334457888887889*******..9999....***********************9998888..6655 PP
2B361.21.7e-19162251798
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          ++++lk++ l+l k+f++++g++k +s +++l++e+g +W++ l++ k+ ++++l+ GW  F++ ng+k+ D+++Fkl++ ++ ++v+ +
  GSBRNA2T00012725001 162 SNSSLKHNKLYLGKEFVAANGLNKGCS-EIVLKNERGGRWTLPLKHYKSINHTYLGPGWTPFCQVNGIKAEDSFMFKLVR-TGDKPVLCL 249
                          67899999****************998.****************99********************************98.666688888 PP

                          E- CS
                   B3  97 fr 98 
                          + 
  GSBRNA2T00012725001 250 CP 251
                          75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-209106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-1910111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.44811104IPR003340B3 DNA binding domain
CDDcd100173.40E-151299No hitNo description
SMARTSM010192.6E-2114104IPR003340B3 DNA binding domain
PfamPF023625.4E-92596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-17154252IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-14156251No hitNo description
PROSITE profilePS5086312.76156252IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-17157253IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.2E-20157253IPR003340B3 DNA binding domain
PfamPF023623.5E-18161251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-7299368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-6305362IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.837309375IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVDEFLYSPI KPHFFQPLLP GFHTHLNIPV AFFSKHVVGR HDHVKIAKLR TYASDKNWKV  60
KMDGSKLTDG WEDFAVAHDL RVGDMIVFRH EGEMVFHVTA LGPSCCEIQY TSTHNINDDS  120
HDETNNIVTG NSSREKRKRV KKNPKPVPQA SLHSSCYVGS VSNSSLKHNK LYLGKEFVAA  180
NGLNKGCSEI VLKNERGGRW TLPLKHYKSI NHTYLGPGWT PFCQVNGIKA EDSFMFKLVR  240
TGDKPVLCLC PEESSHRDKT PLECLEDSDD VNPLSSSTCS GDKSSKSKES KEESLGDKRA  300
SSSYSEDRFL TLTLTQKAVK RYQLFLPMGF AKRNGINKPG KITLLGQDGV KQEVALMQNK  360
RTGQNANWKR LESVP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012725001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022562372.10.0B3 domain-containing protein REM17-like
SwissprotQ84WP38e-84REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A078G5G10.0A0A078G5G1_BRANA; BnaC07g12360D protein
TrEMBLA0A0D3D6U30.0A0A0D3D6U3_BRAOL; Uncharacterized protein
STRINGBo7g054150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-78B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]