PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012280001
Common NameGSBRNA2T00012280001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 315aa    MW: 35334.2 Da    PI: 9.6459
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012280001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.3e-1936119590
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           +++ +l+++ l lp++f++ +g++++++ ++ l++e+grsW++ l+ +   g++++++GW++F+++ngLk+g    Fkl++r ++
  GSBRNA2T00012280001  36 YVSPATLRHDKLNLPRSFVRVNGLETRCG-EIHLMNEKGRSWTLALK-QELCGSTYIRRGWRSFCSSNGLKTGGLYNFKLIKRGRT 119
                          567888999**************999887.****************3.55556699************************986433 PP
2B361.61.3e-19221309999
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++l+s  lvlp +f+++hg++  e++++tl d++g +W  +l+ +k+s+r+ l +GWkeF +an ++ g+++v+kl+++ ++++ +k+++
  GSBRNA2T00012280001 221 SNLTSYKLVLPLHFTKRHGIN--EKTKMTLLDKNGVKWFTNLRSEKTSDRVRLVGGWKEFFEANCVEIGESIVLKLIWEGDKSCALKFCS 308
                          6677788***********999..4569****************************************************99999999998 PP

                          S CS
                   B3  99 k 99 
                          k
  GSBRNA2T00012280001 309 K 309
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-1926127IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-1728125IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-1630124No hitNo description
SMARTSM010193.5E-2032128IPR003340B3 DNA binding domain
PROSITE profilePS5086314.7232127IPR003340B3 DNA binding domain
PfamPF023621.3E-1735119IPR003340B3 DNA binding domain
PROSITE profilePS5086312.252213310IPR003340B3 DNA binding domain
SMARTSM010196.8E-19215310IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-17220300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19220302IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-18220309IPR003340B3 DNA binding domain
CDDcd100177.33E-19221298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
LISSFTGNIP EKKKVKKNPR KETESASLDP SCFVAYVSPA TLRHDKLNLP RSFVRVNGLE  60
TRCGEIHLMN EKGRSWTLAL KQELCGSTYI RRGWRSFCSS NGLKTGGLYN FKLIKRGRTS  120
VLRLSSTGSD LEEESSEGDE VESLSTGPES DEGTKTNLEK KKNPKNDAES SSLYHSCYVA  180
NVTPSSLQDD RLDLRKSFVR ANALETRCGE IVLTNEKGRP SNLTSYKLVL PLHFTKRHGI  240
NEKTKMTLLD KNGVKWFTNL RSEKTSDRVR LVGGWKEFFE ANCVEIGESI VLKLIWEGDK  300
SCALKFCSKV KHET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012280001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484683.11e-153PREDICTED: putative B3 domain-containing protein REM15
TrEMBLA0A078G1A50.0A0A078G1A5_BRANA; BnaC04g36210D protein (Fragment)
STRINGBo4g154850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.17e-68B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]