PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011540001
Common NameGSBRNA2T00011540001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 584aa    MW: 63272.9 Da    PI: 4.5977
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011540001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.52.5e-1102185838374
                 GRAS   8 cAeavss.gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                          c   ++s ++   a+a+L r+++ +s++gdp++R+  yfteAL +rl+   +++++    s+++   +++ + ++k++++++P++kf+hl
  GSBRNA2T00011540001 218 CSLILDSsDSVDPAKAALVRIKKSVSEHGDPTERVGYYFTEALCNRLSP--DSVSN---DSSQAAAIVENLILSYKTLNDACPYFKFAHL 302
                          5555555145569***********************************9..44443...3333333499999****************** PP

                 GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlv 182
                          taNqaIlea+e+++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++Ri g+ +p+      + +l +tg+rL++fA+ l+++f+f + v
  GSBRNA2T00011540001 303 TANQAILEATEHSSKIHIVDFGIVQGIQWPALLQALATRSSGKPaQVRISGIPAPSCLgqsPEPSLIATGNRLRDFAKVLDLNFDFIP-V 391
                          ****************************************77666*********9987888999************************.7 PP

                 GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                           + ++ l+ +++rv+p+EalaVn++lql++llde+  + +   + L+l +sl+P vv++ e ++++n+  F++r+ +a+++ysa+f+sle
  GSBRNA2T00011540001 392 LTPVHLLNGSSFRVDPDEALAVNFMLQLYKLLDETPVVFD---TALRLARSLNPMVVTLGEYDVSLNRVGFANRVKNAIHFYSAVFESLE 478
                          99******************************88777766...*********************************************** PP

                 GRAS 273 aklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv. 359
                           +l+r+seer  vEr+++gr i+ +v  e +  +r r+e +e+Wr  +e+aGF++v+ls++a++qa+ ll +++ s  y++ e++  +v 
  GSBRNA2T00011540001 479 PSLGRDSEERLRVERVMFGRTISGLVGPEITGnQRLRMEGKEQWRVLMENAGFESVKLSNYAVSQAEILLWNYNySSLYSIVESKPGFVs 568
                          ***************************997764789**************************************9999*******99999 PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          l W+d pL++vS+Wr
  GSBRNA2T00011540001 569 LAWNDLPLLTVSSWR 583
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.992185561IPR005202Transcription factor GRAS
PfamPF035148.6E-108218583IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQPQ DHQIFGINPL SLNPWPTANT QSLGFGLSGS  60
GFPDPFQVNG GGDPGDSGFP FHSLEHHHPT AAGGGGGGFR LSDFDGGTGG EFESDEWMET  120
LITGGDSVAA AEGPDCDTWQ NNNDFVIYGP DPFAAYPSSQ PSDLNQVVAT STSLPSTLWP  180
PSSPLSAPPL PSLSPPHGGS GSHDFDLESP LLRAIHDCSL ILDSSDSVDP AKAALVRIKK  240
SVSEHGDPTE RVGYYFTEAL CNRLSPDSVS NDSSQAAAIV ENLILSYKTL NDACPYFKFA  300
HLTANQAILE ATEHSSKIHI VDFGIVQGIQ WPALLQALAT RSSGKPAQVR ISGIPAPSCL  360
GQSPEPSLIA TGNRLRDFAK VLDLNFDFIP VLTPVHLLNG SSFRVDPDEA LAVNFMLQLY  420
KLLDETPVVF DTALRLARSL NPMVVTLGEY DVSLNRVGFA NRVKNAIHFY SAVFESLEPS  480
LGRDSEERLR VERVMFGRTI SGLVGPEITG NQRLRMEGKE QWRVLMENAG FESVKLSNYA  540
VSQAEILLWN YNYSSLYSIV ESKPGFVSLA WNDLPLLTVS SWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1402095832375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.64750.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, sepals, filaments of stamen, and in the central cylinder of the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011540001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022544579.10.0scarecrow-like protein 4
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A078IV800.0A0A078IV80_BRANA; BnaA07g37410D protein
STRINGBo7g064520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]