PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00011247001 | ||||||||
Common Name | GSBRNA2T00011247001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 711aa MW: 79768.1 Da PI: 6.8675 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.6 | 1.6e-16 | 26 | 79 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++q++ Le++F+++++p+ + +L ++l+L+++q+k+WFqN+R++ k GSBRNA2T00011247001 26 IYHRHSNHQIQKLEAYFKECPHPDDLQQLKLGEELKLKQKQIKFWFQNKRTQAK 79 567899********************************************9987 PP | |||||||
2 | START | 124.7 | 1.1e-39 | 237 | 447 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 + +a +e++++++ eep+W kss ++en+++ +k + k+ ++e +++++v + ++ +lv+ lld+ +W + ka+t GSBRNA2T00011247001 237 MVAAVTEVITLIQTEEPMWIKSSidsrlviDQENYEKKFTKNSYFKT-RIESSKEIAVIPLDAKNLVNMLLDTE-KWASLFStivsKAKT 324 67899**********************99999999999999988888.**************************.66666666666**** PP EEEECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 82 levissggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 + v++s lm+ +l lspl p R+f+++R+++ql++g wvi+dvS + ++ + + + ++pSg+li+ ++nghskvtw+ehv GSBRNA2T00011247001 325 IHVLESSK---LMYEQLHILSPLLPpREFMILRCCQQLEEGLWVIADVSYHQVAFEF-EFGTPACYKRPSGFLIQAMPNGHSKVTWMEHV 410 ****9975...666777777788777*****************************98.788888899*********************** PP E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++++++ h ++r l+ g ga++w+atl+r ce+ GSBRNA2T00011247001 411 EVNDKVRaHRIYRDLLCGGFGYGARRWTATLERMCER 447 ******99***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-16 | 7 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.04E-15 | 9 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.03 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-14 | 23 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.02E-14 | 24 | 82 | No hit | No description |
Pfam | PF00046 | 5.6E-14 | 26 | 79 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 41.045 | 226 | 450 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.28E-26 | 228 | 448 | No hit | No description |
CDD | cd08875 | 9.79E-91 | 230 | 446 | No hit | No description |
SMART | SM00234 | 9.7E-27 | 235 | 447 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-32 | 237 | 447 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.9E-6 | 276 | 411 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.75E-7 | 471 | 674 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MASGRDSSSS DEQETSLYTS DGDKRIYHRH SNHQIQKLEA YFKECPHPDD LQQLKLGEEL 60 KLKQKQIKFW FQNKRTQAKV QNEKADNASL RTENMKIRRE NEAMQEALNT VTCPPCGGPH 120 PEQVDRKLYF QNLSANNAYL REERDKLSIL VYKTEGHPKP IVNALAYLHG PSLHASTSNN 180 PHVTYGTSSN HLVEPPSLLR ELYLREHISF AQPPQPRQLQ CSPPLSNMEK VMMTEAMVAA 240 VTEVITLIQT EEPMWIKSSI DSRLVIDQEN YEKKFTKNSY FKTRIESSKE IAVIPLDAKN 300 LVNMLLDTEK WASLFSTIVS KAKTIHVLES SKLMYEQLHI LSPLLPPREF MILRCCQQLE 360 EGLWVIADVS YHQVAFEFEF GTPACYKRPS GFLIQAMPNG HSKVTWMEHV EVNDKVRAHR 420 IYRDLLCGGF GYGARRWTAT LERMCERLSL YSVSDFPTTD DPGVVKTING RRRLMDLGER 480 MLKNFAWILN MPEKSDFSQQ SATNSSGVNI SVRVNKEAGQ PVGLIVCACS SLCLPLAPLQ 540 VYNFLKNLEV RHQWDVLCHA SPVTEVARFV TGANNKNCVN ILQPSSAAEG GDLMIIQDSF 600 IDALGGMVVY APVDLSTAHA AVSGNVNPSD IPILPSGFVI SRDGRPSATA ELDGGCDNCK 660 TLLTVAFQIL VTGPTIYEEL QMDKWTTSVD TLISSTITKV KAMLNCHDGQ * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in anthers with highest levels in the tapetum and pollen grains, and chalazal end of the embryo sac. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00011247001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009103958.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG10-like | ||||
Swissprot | Q9FFI0 | 0.0 | HDG9_ARATH; Homeobox-leucine zipper protein HDG9 | ||||
TrEMBL | A0A078IUY7 | 0.0 | A0A078IUY7_BRANA; BnaA07g37850D protein | ||||
STRING | Bra003213.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8468 | 15 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17320.1 | 0.0 | homeodomain GLABROUS 9 |
Publications ? help Back to Top | |||
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