PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00010982001
Common NameGSBRNA2T00010982001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 122aa    MW: 13962.8 Da    PI: 10.0693
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00010982001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.42.4e-1363114349
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFq 49 
                          +R+++t++ l++Lee +++ +r+psa+++++++++l    +++ ++V++W q
  GSBRNA2T00010982001  63 SRWNPTPDHLKALEEIYQQgTRTPSADHMKQITAQLrrygKIEAKNVFYWLQ 114
                          7*****************99******************************77 PP
2Wus_type_Homeobox82.84.1e-2762116357
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNr 57 
                          ++RW+Ptp+ +k Lee+y++G+rtP+++++++ita+L++yGkie kNVfyW Q  
  GSBRNA2T00010982001  62 SSRWNPTPDHLKALEEIYQQGTRTPSADHMKQITAQLRRYGKIEAKNVFYWLQIP 116
                          79**************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.93E-563114IPR009057Homeodomain-like
PfamPF000464.3E-1163114IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
NEGGADSFNG GRKLRTLITR IYSCPTSAAN TNFDHRFNMA EQNKRELMML NSETQHPPVM  60
VSSRWNPTPD HLKALEEIYQ QGTRTPSADH MKQITAQLRR YGKIEAKNVF YWLQIPKQQS  120
P*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed during initiation of the shoot apical meristem, when cotyledonary primordia arise at the flanks of the apical embryo domain phase. Confined to the initiating vascular primordium of the cotyledons during heart and torpedo stages, but only weakly expressed during bent cotyledon stage. {ECO:0000269|PubMed:14711878}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00010982001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145947.13e-66PREDICTED: WUSCHEL-related homeobox 1
RefseqXP_013584234.12e-66PREDICTED: WUSCHEL-related homeobox 1 isoform X2
RefseqXP_013639982.12e-66WUSCHEL-related homeobox 1-like
RefseqXP_013718706.12e-66WUSCHEL-related homeobox 1-like
SwissprotQ6X7K08e-66WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A078JXB42e-87A0A078JXB4_BRANA; BnaAnng36010D protein (Fragment)
STRINGBra022267.1-P1e-65(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-68WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]