PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00010924001
Common NameGSBRNA2T00010924001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 350aa    MW: 39271.6 Da    PI: 9.5542
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00010924001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-19192242256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  GSBRNA2T00010924001 192 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAADILRGE 242
                          59******9.**********955...5**********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.52E-31191251No hitNo description
SMARTSM003801.4E-34192255IPR001471AP2/ERF domain
PROSITE profilePS5103222.26192249IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-22192250IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-31192251IPR001471AP2/ERF domain
PfamPF008472.5E-12193241IPR001471AP2/ERF domain
PRINTSPR003673.6E-11193204IPR001471AP2/ERF domain
PRINTSPR003673.6E-11215231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEDQFPKLEP RFMHEKLLSS GLYGFLSSST PSQLLGVPII LEGMISPTLS SSQSYMASHH  60
ELTSSIHHQQ SPVASVPWNF LDSFPQSQRP DDIHHPSKPP NLSLFLKEPK LLELSQSNSN  120
MMPYHNYTPN SLHHESDQTR SDQWVDINKA LTNYPSKGFG NYWLSTTKTQ PMKLASGTRT  180
RKVVQTTTPT KLYRGVRQRH WGKWVAEIRL PRNRTRVWLG TFETAEQAAM AYDTAADILR  240
GEYAHLNFPD QKHQLKSGPL RCMIASLLDS KIQQISASSQ VISSGNSPSP SSPKVGTSEL  300
KNNIKTESGE VVMMKKQKIN KEVMEGDGVQ LSRMPSLDMD LIWDALSLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20191249160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-20191249463ATERF1
3gcc_A5e-20191249463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00010924001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634554.10.0PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A078IX290.0A0A078IX29_BRANA; BnaC04g55700D protein
STRINGBo4g130860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-171ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]