PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009098001
Common NameGSBRNA2T00009098001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 253aa    MW: 29121.1 Da    PI: 9.1179
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009098001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.26.8e-49141341128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yL +kv+g  l++  vi+e+di+k+ePwdLp      ++e yfFs r+ ky++g+r+nr+t sgyWkatg d+
  GSBRNA2T00009098001  14 LPPGFRFHPTDEELVVHYLSRKVSGLLLPA-YVIPEIDICKAEPWDLPGD---CNSERYFFSMREAKYPNGNRSNRSTGSGYWKATGIDR 99 
                          79***************************9.89***************44...35699******************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ +   ++ g+kktLvfykg+ p+g++t+Wv+heyrl
  GSBRNA2T00009098001 100 QIGK---KVLGMKKTLVFYKGKPPNGTRTSWVLHEYRL 134
                          **77...89***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5610156IPR003441NAC domain
PROSITE profilePS5100555.80414156IPR003441NAC domain
PfamPF023651.9E-2615134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEKPCSIKNR ELRLPPGFRF HPTDEELVVH YLSRKVSGLL LPAYVIPEID ICKAEPWDLP  60
GDCNSERYFF SMREAKYPNG NRSNRSTGSG YWKATGIDRQ IGKKVLGMKK TLVFYKGKPP  120
NGTRTSWVLH EYRLVDSQHE SYGENMNWVL CRVFLKKRSN NNKKKKKEDE REKKEEIESD  180
DNKSTCPIFY DFMRNDVKKG KCCTLNLTRC SSPSSASSSV CSSALIQTCL NSDSDNHHQE  240
TSCRENKFHL FL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-501115712169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162173KKKKKEDEREKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009098001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756680.0KM975668.1 Brassica napus NAC transcription factor 41.1 (NAC41.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634581.10.0PREDICTED: NAC domain-containing protein 41-like
SwissprotO227981e-108NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A078FYP50.0A0A078FYP5_BRANA; BnaC04g11040D protein
STRINGBo4g043670.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-103NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]