PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006917001
Common NameGSBRNA2T00006917001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 353aa    MW: 39461.7 Da    PI: 7.5768
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006917001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.59e-1176115541
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                          k  rr+++NReAAr+sR+RKka++++Le    k  +Le+e
  GSBRNA2T00006917001  76 KTLRRLAQNREAARKSRLRKKAYVQQLEScriKLSQLEKE 115
                          7789***********************9732255555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.8E-969120No hitNo description
SMARTSM003381.7E-672161IPR004827Basic-leucine zipper domain
PfamPF077161.7E-773120IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.70374118IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-876117No hitNo description
CDDcd147081.37E-2176128No hitNo description
PROSITE patternPS0003607994IPR004827Basic-leucine zipper domain
PfamPF141441.4E-30170244IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSTDFDSFVY NVFGKTDNTR LVAPSSSTRP SSEPSMDLTN HSQFQLPQPS KSIKKEGNRK  60
GPASSDYDIP KSSDPKTLRR LAQNREAARK SRLRKKAYVQ QLESCRIKLS QLEKEIQRAR  120
SQGVFFGGSL IGGDQQQGGL PTGPGNTSSA EAAVFDMEYT RWQEEQQRLL TELRMATQEH  180
LAENELRMFV DNCLAHYDHL INLKAMVAKT DVFHLISGAW KSPAERCFLW MGGFRPSEII  240
KVIVNQIEQL TEQQIVGICG LQQSTQEAEE ALSQGLEALN QSLSDSIVSD SLSPASAQFP  300
PHLSNFMSHM SLALNKLSAL EGFVLQVPSN PFLLFKTEVY TKLYQSLYIK YI*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in inflorescence apex and flowers. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006917001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1327420.0HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130965.10.0PREDICTED: transcription factor TGA2.2-like isoform X1
SwissprotE3VNM40.0TGA10_ARATH; Transcription factor TGA10
TrEMBLA0A078JV840.0A0A078JV84_BRANA; BnaUnng03970D protein
STRINGBo3g004060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72072843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]