PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00006850001 | ||||||||
Common Name | GSBRNA2T00006850001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 306aa MW: 32230.6 Da PI: 8.0127 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.9 | 6.2e-37 | 72 | 152 | 3 | 83 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 +k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ +++ +ss++ GSBRNA2T00006850001 72 PKRSSNKDRHIKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASAAAVSSHH 152 6999****************************************************************8874444444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.8E-30 | 76 | 152 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.28 | 77 | 131 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MDPKNPNRHQ VPNFLNPPPR HQSIGDASKD DNHHHSKPAE VKDFQIVVAS DKEPNISKKP 60 QQQQQQQNQL GPKRSSNKDR HIKVEGRGRR IRMPALCAAR IFQLTRELGH KSDGETIQWL 120 LQQAEPSIIA ATGSGTIPAS ALASAAAVSS HHLQGGSLTA GLMISHELDG GGGSSSGRPN 180 WGVGGGDGVG GASRSSLPTG LWPNVAGFGA GVQTTGMMSD GGAMSFASIL GGGNNNQMPG 240 LELGLAQEGN VGVLNPHSFA QIYQQQMSQA QAQGRVLHHT LLHNPSHEEH QQESGEKDDS 300 QGSGR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00006850001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013672567.1 | 1e-179 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 1e-129 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A078ITM0 | 0.0 | A0A078ITM0_BRANA; BnaC07g49020D protein | ||||
STRING | Bo7g084120.1 | 1e-173 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4050 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-115 | TCP family protein |