PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00006460001 | ||||||||
Common Name | GSBRNA2T00006460001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 409aa MW: 44522.5 Da PI: 6.3151 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.1 | 2.3e-11 | 44 | 69 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++f+rtG C yG++C+++H+ GSBRNA2T00006460001 44 PGERDCHYFMRTGKCGYGSSCRYNHP 69 5789*********************9 PP | |||||||
2 | zf-CCCH | 37.3 | 4.6e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tG CkyG+ Ck++H++ GSBRNA2T00006460001 90 QPDCEYFLKTGACKYGAACKYNHPK 114 789********************96 PP | |||||||
3 | zf-CCCH | 31 | 4.4e-10 | 135 | 159 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++ G C++G CkF+H++ GSBRNA2T00006460001 135 EKSCPYYMQKGMCRFGVACKFHHPQ 159 667********************97 PP | |||||||
4 | zf-CCCH | 42.1 | 1.4e-13 | 228 | 251 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+ff++tGtCkyGd+Ck++H++ GSBRNA2T00006460001 228 AECSFFMKTGTCKYGDNCKYSHPK 251 79********************96 PP | |||||||
5 | zf-CCCH | 34.5 | 3.4e-11 | 274 | 297 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +f ++G+CkyG++CkF H+ GSBRNA2T00006460001 274 LPACGNFKAYGFCKYGANCKFDHP 297 589********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.455 | 43 | 71 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-9 | 45 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 47 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 49 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-6 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.849 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-10 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 93 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-6 | 131 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.638 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-7 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-4 | 137 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.38 | 224 | 252 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-9 | 225 | 251 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-11 | 227 | 251 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-7 | 228 | 253 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-6 | 230 | 251 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 267 | 297 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 271 | 298 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.779 | 271 | 299 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 274 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-4 | 277 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MSETPQVQNS TGSIPSSDKS EDTLTKVKVN EENMDEPSLF PDRPGERDCH YFMRTGKCGY 60 GSSCRYNHPV SHVPEAVFYH REELPERVGQ PDCEYFLKTG ACKYGAACKY NHPKDRNGAG 120 PVLFNALGYP MRQGEKSCPY YMQKGMCRFG VACKFHHPQT HNAQPTSFPF GGSLPVMSLA 180 PATYEAMSRP QALHPQAYSF MVAPPQGWST FMGGYDMKTE LDSSSEKAEC SFFMKTGTCK 240 YGDNCKYSHP KERMLLSPPP NLFNPVVLPA RPGLPACGNF KAYGFCKYGA NCKFDHPVPV 300 NTYNNTGSTM PSPPSAYAPP VSTPVRITSP PGRSNGGDKP AAEDNSSETV KEEDGPDKAE 360 VHDSSQLSHG STALSNDAEN PGPETKKEDD DPLPADNSGK QESSDNSA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.28245 | 0.0 | microspore| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00006460001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009141281.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 26-like | ||||
Refseq | XP_013744420.1 | 0.0 | zinc finger CCCH domain-containing protein 26-like | ||||
Swissprot | O48772 | 1e-170 | C3H26_ARATH; Zinc finger CCCH domain-containing protein 26 | ||||
TrEMBL | A0A078G134 | 0.0 | A0A078G134_BRANA; BnaA04g19090D protein | ||||
STRING | Bra021817.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2380 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32930.1 | 1e-154 | zinc finger nuclease 2 |
Publications ? help Back to Top | |||
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