PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00005695001
Common NameGSBRNA2T00005695001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 267aa    MW: 31119.2 Da    PI: 5.4405
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00005695001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK76.92.2e-24141189452
               RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          + s ed++ yF++pi++AAkeLgv+lT+LKr+CR++G +RWPhRk++s+
  GSBRNA2T00005695001 141 KFSREDMKPYFKMPITKAAKELGVGLTLLKRRCRELGFSRWPHRKLTSI 189
                          67899*****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.428125209IPR003035RWP-RK domain
PfamPF020429.1E-21143189IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MADHEHLWSW SESNDYDSFL QEENLFSLLD QSLSFDYNSF VNPFNDLQNE TWFSLQDSIN  60
LDPISTCFPA VDHMSMASVD LEAFSTLSQA DVFGELWNEN ASNFNNHVEP EMEIILHDGN  120
NTTKETTMQK RRYRGDRLIQ KFSREDMKPY FKMPITKAAK ELGVGLTLLK RRCRELGFSR  180
WPHRKLTSID GLINNLKDHL GKMEGEVNRS KLMNALEILE AEKKMIEEFP DLEFEDKTKR  240
LRQACFKANY KRRRLLCSMS TTSFVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250254KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00005695001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022548100.10.0protein RKD3-like
SwissprotQ9FGD11e-96RKD3_ARATH; Protein RKD3
TrEMBLA0A078G1X70.0A0A078G1X7_BRANA; BnaA09g07620D protein
STRINGBra037130.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121801932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.13e-94RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]