PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00005626001
Common NameGSBRNA2T00005626001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 353aa    MW: 37978.4 Da    PI: 10.1355
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00005626001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.43.1e-13274327558
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                          +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+  e+ ++ ++
  GSBRNA2T00005626001 274 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQKKQAEMMEMQKN 327
                          69***************************************9988777777654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-10270335IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.553272323IPR004827Basic-leucine zipper domain
PfamPF001706.1E-11274327IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.7E-13274327No hitNo description
CDDcd147071.29E-22274326No hitNo description
SuperFamilySSF579596.25E-10274323No hitNo description
PROSITE patternPS000360277292IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGTHINFNNI GGGGGGEGSN QMKPTDNAYP LARQSSLYSL TFDELQSTLL GGPGKDFGSM  60
NMDELLKSIW TAEEAQAMTM TSSAAAATAV AQPGGGIPLQ RQGSLTLPRT ISQKTVDEVW  120
KCLFTKDGNM VGSSGGGSES NAPQRQQTLG EITLEEFLLR AGVVREDNNN NNGFYSNNGA  180
PGGQQLNQPP HPPPHQRMPQ TIFPKQANVA FAGAGNNAGN NNNNGLGSFG GGGVTVAATS  240
PGTSSAENNS LSPVPYVLNR GRRSNTGLEK VIERRQRRMI KNRESAARSR ARKQAYTLEL  300
EAEIEKLKKV NQELQKKQAE MMEMQKNELK ESSKQPWGSK RQCLRRTLTG PW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.98530.0flower| leaf| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00005626001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1228940.0JX122894.1 Brassica napus ABA-responsive element binding factor 4 (ABF4.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112062.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
RefseqXP_009112070.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
RefseqXP_018513767.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
SwissprotQ9M7Q21e-170AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBLA0A078FVZ70.0A0A078FVZ7_BRANA; BnaA01g26200D protein
STRINGBra037533.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19290.11e-63ABRE binding factor 4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  3. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]
  4. Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA
    Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance.
    Plant Mol. Biol., 2018. 98(1-2): p. 137-152
    [PMID:30143991]