PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00004976001

Common Name

GSBRNA2T00004976001, LOC106415917

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 317aa MW: 35051.1 Da PI: 7.5199

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00004976001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.4	2.5e-43	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa+vhk+FGasnv kll++l ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql GSBRNA2T00004976001 9 PCAACKFLRRKCTQECVFAPYFPPDQPHKFAYVHKIFGASNVAKLLNDLASNQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQL 98 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +++l+ +k+e GSBRNA2T00004976001 99 QHDLDNAKKE 108 **999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	1.1E-87	6	311	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	27.059	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-42	9	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MTSSTSSSPC AACKFLRRKC TQECVFAPYF PPDQPHKFAY VHKIFGASNV AKLLNDLASN 60 QREDAVNSLF YEAEARLRDP VYGCVGLISI LQHRLKQLQH DLDNAKKELA AYVAPNAMFP 120 MHHPQPHFMS LPPQPQQPSS ASSSASVLTQ QQQHLNLLPV LAIPTEQLLY HQQHIFEAQQ 180 LAAVNSVSRD QLNEMFRAYG GGSISPHHHH NQPQFDILRF NSGFGSVPTG SVTVTGFNQL 240 SSSGTTITGM SPSLALGDSF VDSPSTNDNY HRDQQLQHQR HQQQSFQQLP LQTQETQTHP 300 NSKSEEGRGS IIGSSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-49	2	112	4	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-49	2	112	4	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00004976001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013712186.1	0.0	LOB domain-containing protein 36
Swissprot	Q9FKZ3	1e-136	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A078IM44	0.0	A0A078IM44_BRANA; BnaA02g34590D protein
STRING	Bo2g167820.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8008	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-116	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Entrez Gene	106415917

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]