PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00004587001

Common Name

GSBRNA2T00004587001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 169aa MW: 19423.2 Da PI: 9.7318

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00004587001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.5	5.2e-12	74	135	2	63
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+ +r +rk +NRe+ArrsR +K++ +ee + +L++eN++L ++l +++ k+e+ GSBRNA2T00004587001 74 KDERRNKRKKSNRESARRSRIKKQKHLEEVRSQLNQLKTENRDLLNRLRYFMHNCQHAKMES 135 7789***************************************************9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-9	67	129	No hit	No description
SMART	SM00338	4.1E-13	73	137	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.4E-9	74	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	75	138	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.47E-9	77	128	No hit	No description
CDD	cd14702	1.02E-14	78	122	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MSSIFPVFSS EPGTCSALES GLTPWNHASD IFSMFDSPVC PVEVNPGLEK TNSCPIQTKN 60 NPNPGSEDTH LPDKDERRNK RKKSNRESAR RSRIKKQKHL EEVRSQLNQL KTENRDLLNR 120 LRYFMHNCQH AKMESDRLRL EHKVLLDKLL NLRQALVLSP AELNMCMR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00004587001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022572835.1	1e-101	bZIP transcription factor 44-like
Refseq	XP_022573491.1	1e-101	bZIP transcription factor 44-like
TrEMBL	A0A078ISE0	1e-120	A0A078ISE0_BRANA; BnaCnng21630D protein
TrEMBL	A0A0D3BEM1	1e-120	A0A0D3BEM1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6AQD8	1e-120	A0A3P6AQD8_BRAOL; Uncharacterized protein
STRING	Bo3g097630.1	1e-121	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	1e-32	basic leucine-zipper 5

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]