PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00003633001
Common NameGSBRNA2T00003633001, LOC106453210
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 396aa    MW: 43664 Da    PI: 7.2051
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00003633001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-114167127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         +++++C+++ rtG C++G++C+F+H+p
  GSBRNA2T00003633001 41 PGEPNCSYYIRTGLCRFGSTCRFNHPP 67
                         5789*********************97 PP
2zf-CCCH37.63.7e-1288112327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C ++++tGtCk+G +CkF+H++
  GSBRNA2T00003633001  88 QPECEYYLKTGTCKFGVTCKFHHPR 112
                          799********************96 PP
3zf-CCCH37.93e-12134158327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C +f+rtG+Ck+G++CkF+H++
  GSBRNA2T00003633001 134 EVDCAYFLRTGHCKFGATCKFNHPQ 158
                          578********************97 PP
4zf-CCCH37.15.2e-12280306127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+++tG Ck+G  CkF+H++
  GSBRNA2T00003633001 280 PGQPECQFYMKTGDCKFGTVCKFHHPR 306
                          5789*********************96 PP
5zf-CCCH38.42.1e-12326352127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++lC f++r+G+Ck+G++CkF+H++
  GSBRNA2T00003633001 326 PGEPLCVFYSRYGICKFGPSCKFHHPM 352
                          589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-44067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.544068IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-54568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-44666IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10885113IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-988112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-491112IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99131159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6134160IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4137157IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5279306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22279307IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6283308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4285307IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7325352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507325353IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9327352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6328353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4330351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLMTQEA MWQMNLSPDE TMETGSYPER PGEPNCSYYI RTGLCRFGST  60
CRFNHPPDRE LVIATARMRG EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRNKAGIAGR  120
VSLNMLGYPL RSNEVDCAYF LRTGHCKFGA TCKFNHPQPQ PQPTTNLMVP TSGQQQSYPW  180
SSASFIPSPR WQDPSGYTPL LMPQGVVPVQ GWNPYTGQLG AVSPSGTGND QTSYRNMQQS  240
EIKESGSHSQ GSFSGLNTGS SVPLGGFYAL PSESVFPERP GQPECQFYMK TGDCKFGTVC  300
KFHHPRDRQA PPPDCLLSTI GLPLRPGEPL CVFYSRYGIC KFGPSCKFHH PMEVFAYDNT  360
ASETDEVVET SGGHSRRVSV SETRQATTSG EDTTN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.99720.0flower| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00003633001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013750923.10.0zinc finger CCCH domain-containing protein 33
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A078INM20.0A0A078INM2_BRANA; BnaA05g33310D protein
STRINGBra040604.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]