PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00002398001 | ||||||||
Common Name | GSBRNA2T00002398001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 305aa MW: 32445.6 Da PI: 6.7284 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.5e-09 | 150 | 194 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L GSBRNA2T00002398001 150 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 194 99***********************55......9**************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-14 | 143 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.802 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-14 | 147 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-6 | 150 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-10 | 151 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 305 aa Download sequence Send to blast |
MASNNNPHEN LSDQTPSDDF FDQILGLPNF SASSSDGGLS GGGAPPMMLQ LGSGEEGSHM 60 AGLGGSGPSV FHNQMFPLGL SLNQGKGPVF LRPEGGGVHA SVNRSSSSSS MKGPVFHGQP 120 MQQPAPAAPH QPTSIRPRVR ARRGQATDPH SIAERLRRER IAERIRALQE LVPTVNKTDR 180 AAMIDEIVDY VKFLRLQVKV LSMSRLGGAG AVAPLVTDMP LSSSVEDETS EGGRTPQPAW 240 EKWSNDGTER QVAKLMEENV GAAMQLLQSK ALCMMPISLA MAIYHSQPPD TSSVVKPETN 300 PPPQ* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 154 | 159 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.9425 | 1e-140 | leaf| seed| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00002398001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK352765 | 0.0 | AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013684158.2 | 0.0 | transcription factor UNE12-like | ||||
Swissprot | O22768 | 1e-171 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A078FYF5 | 0.0 | A0A078FYF5_BRANA; BnaC03g30830D protein | ||||
TrEMBL | A0A3P6AS66 | 0.0 | A0A3P6AS66_BRAOL; Uncharacterized protein | ||||
STRING | Bra000872.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1611 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G02590.2 | 1e-150 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|