PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00001515001
Common NameGSBRNA2T00001515001, LOC106402605
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 363aa    MW: 41733.6 Da    PI: 4.8939
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00001515001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34131042102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lpk+Fkh+nfaSF+RQLn+YgF+k + e+         weF+++ F +g+ 
  GSBRNA2T00001515001  13 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPKFFKHNNFASFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQP 93 
                          9**************************************************************99988.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +l+++i+r+k 
  GSBRNA2T00001515001  94 HLMKNIHRRKP 104
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.8E-359102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-629102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.2E-3810102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.6E-3113102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF114143.0E-6126173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDESNHGGSL PPFLTKTYEM VDDSSSDSIV SWSQSNKSFI VWNPPEFSRD LLPKFFKHNN  60
FASFIRQLNT YGFRKADPEQ WEFANDDFVR GQPHLMKNIH RRKPVHSHSS PSLQPHPLTD  120
SERQRMNDQI ERLTKEKEVL LQELHKQEKE REMFQQQVKE LKDQLQHMEK RQKTMVSFVS  180
QVLEKPELAL NLSPCLLETN ERKRRFPRIG LEGSTSPSSQ ARELQVEQLE SSIAVWENLV  240
SEDSSESLGQ EKRSMMTLDV DESSTCPESP PLPCIQLSID TCPNCPTSPR TIDMNSEPDT  300
SKEPPPAAGV NDVFWQQLLT ENPGSTEQKE VQAERKDDKA EECWWDLRNV NTLTEQLGHL  360
TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-23910225129Heat shock factor protein 1
5d5v_B4e-23910225129Heat shock factor protein 1
5d5v_D4e-23910225129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00001515001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4352410.0HQ435241.1 Brassica napus cultivar Deyou No.5 heat shock transcription factor A4a (HsfA4a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623224.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_013623225.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_013698830.10.0heat stress transcription factor A-4a
RefseqXP_013698833.10.0heat stress transcription factor A-4a
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A078F8940.0A0A078F894_BRANA; BnaC03g62890D protein
TrEMBLA0A0D3BKD60.0A0A0D3BKD6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B7W00.0A0A3P6B7W0_BRAOL; Uncharacterized protein
STRINGBo3g157380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.10.0heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]