PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000779001
Common NameGSBRNA2T00000779001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 124aa    MW: 14457.5 Da    PI: 10.874
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000779001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-191261255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr++  +g+WvAeIr p+    + +r +lg+f +aeeAa a+++a+ k++g
  GSBRNA2T00000779001 12 LYRGVRQRQ-WGKWVAEIRLPK----HrTRLWLGTFKSAEEAALAYDQAAHKIRG 61
                         59****999.**********94....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.45E-301170No hitNo description
PROSITE profilePS5103222.4311269IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-221270IPR016177DNA-binding domain
SMARTSM003804.3E-351275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-311270IPR001471AP2/ERF domain
PRINTSPR003676.1E-111324IPR001471AP2/ERF domain
PfamPF008472.9E-131361IPR001471AP2/ERF domain
PRINTSPR003676.1E-113551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MKKANVTRPV KLYRGVRQRQ WGKWVAEIRL PKHRTRLWLG TFKSAEEAAL AYDQAAHKIR  60
GDNTRLNFPD IASRNRRKQW NGSLVFYYTV PKLEQEREIP DSSGYGSPES NITMLDFSSQ  120
WMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-191169463ATERF1
3gcc_A1e-191169463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.253076e-43flower
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000779001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133951e-55AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankAY5608581e-55AY560858.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65130) mRNA, complete cds.
GenBankBT0257231e-55BT025723.1 Arabidopsis thaliana At5g65130 mRNA, complete cds.
GenBankCP0026881e-55CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4471091e-55DQ447109.1 Arabidopsis thaliana clone pENTR221-At5g65130 AP2 domain-containing transcription factor (At5g65130) mRNA, complete cds.
GenBankDQ6533921e-55DQ653392.1 Arabidopsis thaliana clone 0000013473_0000009703 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613888.12e-52PREDICTED: ethylene-responsive transcription factor ERF057-like
RefseqXP_022551130.11e-52ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ24e-44ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A078F6W06e-87A0A078F6W0_BRANA; BnaA06g24070D protein
TrEMBLA0A397Z2J97e-87A0A397Z2J9_BRACM; Uncharacterized protein
TrEMBLM4E6F36e-87M4E6F3_BRARP; Uncharacterized protein
STRINGBra024357.1-P1e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-36ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]