PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00000340001 | ||||||||
Common Name | GSBRNA2T00000340001, LOC106345570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 315aa MW: 35230.1 Da PI: 5.074 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 79 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s ++GVr++ +g+WvAeIr+p + + r +lg+f taeeAa a+++a+ +++g GSBRNA2T00000340001 79 SSFRGVRQRV-WGKWVAEIREP---N-KvSRLWLGTFPTAEEAASAYDEAAMAMYG 129 679*****99.**********8...2.47***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-21 | 79 | 138 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.95E-31 | 79 | 139 | No hit | No description |
PROSITE profile | PS51032 | 22.234 | 80 | 137 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-13 | 80 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 80 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-37 | 80 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MAVYDQTGTH TVSISRKRKS RARADGTTVA DRLKKWKEYN DSVNASSIKQ GEKPKRKPPA 60 KGSKKGCMKG KGGPENSHSS FRGVRQRVWG KWVAEIREPN KVSRLWLGTF PTAEEAASAY 120 DEAAMAMYGP LARLNFPQQC VGSESLTSTS SQSEVCRDED KAVLGVEQED VDCKTRPVSE 180 IKDVKEVCGD HAYTRLNEFD EEYWSRLSNG LEKPKEEEVI RPRQELDMLT VADYGWPGDM 240 QNEQGFWDAD DSFDIDELLR DIDVGLLTGH DPSQNQSQVV HPGGYDSHPL PMEPQDNNHE 300 LFNLSSLDGS LTKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 69 | 139 | 3 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 19 | SRKRKS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed preferentially in roots and stems, and at a lower level in leaves. {ECO:0000269|PubMed:10809011}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00000340001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022575543.1 | 0.0 | dehydration-responsive element-binding protein 2B | ||||
Swissprot | O82133 | 7e-99 | DRE2B_ARATH; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A078F635 | 0.0 | A0A078F635_BRANA; BnaA05g27930D protein | ||||
STRING | Bra029889.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2874 | 17 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11020.1 | 3e-73 | DRE/CRT-binding protein 2B |
Link Out ? help Back to Top | |
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Entrez Gene | 106345570 |