PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g25113.1.p
Common NameBRADI_5g25113
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 296aa    MW: 31826.1 Da    PI: 7.6394
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g25113.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.2e-181979357
                      --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      +R+t+t+eq+++L el++    r p+ae+++++A +l    +++ ++V++WFqN++a+e++
  Bradi5g25113.1.p 19 TRWTPTAEQVRILRELYYGlgIRSPNAEQIQRIAGRLrqygRIEGKNVFYWFQNHKARERH 79
                      7*****************7679*************************************95 PP
2Wus_type_Homeobox1092.7e-351881365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        tRWtPt+eQ++iL+ely+  G+r+Pn+e+iqri+ +L++yG+ie+kNVfyWFQN+kaRer+k+
   Bradi5g25113.1.p 18 GTRWTPTAEQVRILRELYYgLGIRSPNAEQIQRIAGRLRQYGRIEGKNVFYWFQNHKARERHKK 81
                       69****************988*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.36E-111383IPR009057Homeodomain-like
PROSITE profilePS500719.9121480IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-61683IPR009057Homeodomain-like
SMARTSM003896.9E-41684IPR001356Homeobox domain
CDDcd000863.32E-51981No hitNo description
PfamPF000464.9E-161979IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDGAAANGGQ AAPCRASGTR WTPTAEQVRI LRELYYGLGI RSPNAEQIQR IAGRLRQYGR  60
IEGKNVFYWF QNHKARERHK KRLTTIDVSP NNNDSNNNCS NNASILSLSP SSGAAAGLYG  120
AGSNGGGGSA HLQMDANASA TCWDVGSNAA MANDRSFMQL LQEQDYMGVR TSTAAMAPTP  180
WPACFPAFSP YQPPPAREPE TLPLFPTGGG SSGGHQEIVN GVHGGSYQLL QSNSQQLCWG  240
QQHHHHHQLL LQEQQNYQYS SYSSNNQLMM PTQDAAAAAS LELTLSSHYP AGSSM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g25113.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6111201e-60KC611120.1 Oryza granulata WUS (WUS) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311863.10.0WUSCHEL-related homeobox 1B-like
TrEMBLA0A0Q3KYH20.0A0A0Q3KYH2_BRADI; Uncharacterized protein
STRINGOPUNC04G26040.19e-65(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Representative plantOGRP90871114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-33WOX family protein