PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g24080.1.p | ||||||||
Common Name | BRADI_5g24080, LOC100835061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WOX | ||||||||
Protein Properties | Length: 237aa MW: 25356.6 Da PI: 9.5591 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.2 | 1.9e-20 | 82 | 141 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++++eq+++Le+l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Bradi5g24080.1.p 82 TRWNPSTEQIKVLEALYRGgMRTPNAAQIERITEELgrhgRIEGKNVFYWFQNHKARERQ 141 8*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.7 | 2.2e-37 | 81 | 143 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +tRW+P++eQik+Le+ly+ G+rtPn+++i+rit+eL ++G+ie+kNVfyWFQN+kaRerqkq Bradi5g24080.1.p 81 TTRWNPSTEQIKVLEALYRGGMRTPNAAQIERITEELGRHGRIEGKNVFYWFQNHKARERQKQ 143 69***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.382 | 77 | 142 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-8 | 79 | 146 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.94E-13 | 80 | 147 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.67E-5 | 82 | 143 | No hit | No description |
Pfam | PF00046 | 6.1E-18 | 82 | 141 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-8 | 82 | 141 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MRLQHLHVAY LENKKAASSS SSALSPSQTP STFPFAFQCL RPLAPKISLP EPRTKAPEFG 60 RVRTAASKLL ACTVQVAAGG TTRWNPSTEQ IKVLEALYRG GMRTPNAAQI ERITEELGRH 120 GRIEGKNVFY WFQNHKARER QKQKRAALLT LATAGTGLDD SSDSPPPPPE TTTTTKDGAE 180 KMEAAACADV DVTTSCKRRC KAWGDGGHGG AAETEGGGAA DDVTLELFPL RPQGKA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g24080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ556181 | 8e-80 | AJ556181.1 Oryza sativa Japonica Group partial mRNA for homeobox protein HB3 (hb3 gene). | |||
GenBank | JF836159 | 8e-80 | JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227318.2 | 1e-175 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q25AM2 | 3e-89 | WOX4_ORYSI; WUSCHEL-related homeobox 4 | ||||
Swissprot | Q7XTV3 | 3e-89 | WOX4_ORYSJ; WUSCHEL-related homeobox 4 | ||||
TrEMBL | I1J2M2 | 1e-173 | I1J2M2_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G24080.1 | 1e-174 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12692 | 30 | 35 | Representative plant | OGRP7167 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 1e-32 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g24080.1.p |
Entrez Gene | 100835061 |