PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17150.5.p
Common NameBRADI_5g17150
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 547aa    MW: 59245.9 Da    PI: 5.9781
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17150.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix113.11.6e-35286371187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+k ev+aLi++r +m++r++++  k+plWee+s+ mr+ g++r+pk+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+qlea
  Bradi5g17150.5.p 286 RWPKTEVHALIQLRMDMDNRYQENGPKGPLWEEISSGMRRLGYNRNPKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLEA 371
                       8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002283345IPR001005SANT/Myb domain
PfamPF138372.9E-23285372No hitNo description
PROSITE profilePS500907.236285343IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-4285342IPR009057Homeodomain-like
CDDcd122037.16E-31285350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MSTMPPPPGP IQPAPISSAA PAAHVAELHQ APPPLGLQGL SFPSMSESES DDESEDDEMT  60
AETGGGSGSQ DGLGKRKHGG SKKLMAFFEG LMKQVIQRQE EMQRRFLETM EKREAERMAR  120
EEAWRKQEVA RLNREQEILA HERAAAASRD ASIIAFLQRV GAGQAVQVPA PVVIPMPAPM  180
QVQTPRQPPR QQLPPPPPPA QATAPPPQPI PAAPLQQQPP PPQPQHKETT MARQEAVTTP  240
RSAPTPTPTP ASGGTSLALV PVSEQQVESH GLGGGGDHGG AASSSRWPKT EVHALIQLRM  300
DMDNRYQENG PKGPLWEEIS SGMRRLGYNR NPKRCKEKWE NINKYFKKVK ESNKRRPEDS  360
KTCPYFHQLE AIYRKKHNGA GAAAAVSAAN AAAVASVCAV TTDQQQSLSL NRHEIEGKKI  420
NDNDKRNNGG VGGATQTQVP TSNGETTPTT TPPLDFSEKK PEDTVRELSE QQQHREFTTD  480
ETDSDDMGDD YTDGEDGEDD GKMQYRIQFQ TPNPVGTNNA PPPATTQTTA VPPTSTPSSS  540
FLAMVQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17150.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589111e-113AK358911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085J16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240190.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A0Q3H6L60.0A0A0Q3H6L6_BRADI; Uncharacterized protein
STRINGBRADI5G17150.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-49Trihelix family protein