PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g16910.1.p
Common NameBRADI_5g16910, LOC100845555
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 266aa    MW: 28587.2 Da    PI: 6.987
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g16910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY202.51.7e-62282206170
             YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl..deslkee......................llee 74 
                         eq+Cyv+CnfC+tilav vP +slfk+v+vrCGhC++llsvnl+      aa ++l  ++sl  +                      l+e+
  Bradi5g16910.1.p  28 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRSLLLPAAAPNQLpfGQSLISPtspasphglldemssfqapsslLTEQ 120
                       689*******************************************999888888887323333333789999**999998887766533333 PP

             YABBY  75 lkveeenlksnvekeesastsvssekl.....senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
                          + ++++s +  ++sa ++ +++++      + e +  +++     + PekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWa
  Bradi5g16910.1.p 121 SSPNVSSITSSN--NSSAINTPATMSMppekaAQREPQTRKNASSgSTKHPEKRQRVPSAYNRFIKDEIQRIKANNPDITHREAFSAAAKNWA 211
                       333333333222..22222222222335433222222222222224799******************************************** PP

             YABBY 162 hfPkihfgl 170
                       hfP+ihfgl
  Bradi5g16910.1.p 212 HFPHIHFGL 220
                       *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.5E-6928220IPR006780YABBY protein
SuperFamilySSF470951.44E-8159213IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.0E-5166214IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMSPAESSET SFFPDHIVEQ QEQPPFVEQE QLCYVHCNFC DTILAVGVPC SSLFKTVAVR  60
CGHCANLLSV NLRSLLLPAA APNQLPFGQS LISPTSPASP HGLLDEMSSF QAPSSLLTEQ  120
SSPNVSSITS SNNSSAINTP ATMSMPPEKA AQREPQTRKN ASSGSTKHPE KRQRVPSAYN  180
RFIKDEIQRI KANNPDITHR EAFSAAAKNW AHFPHIHFGL MPDQALRKTS IQSQDAAGDC  240
MLFKDSLYAA AAAAAAASSM GVTPF*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g16910.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763501e-178AK376350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3121I03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240181.10.0protein YABBY 5
SwissprotQ01JG21e-125YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-125YAB5_ORYSJ; Protein YABBY 5
TrEMBLI1J0380.0I1J038_BRADI; Uncharacterized protein
STRINGBRADI5G16910.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Representative plantOGRP46851123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-51YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]