PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g14280.3.p

Common Name

BRADI_5g14280, LOC100838351

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

DBB

Protein Properties

Length: 268aa MW: 28284.8 Da PI: 5.7636

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g14280.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.6	1e-07	4	46	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e + ++ C ++ lC+ C +++H H++ p Bradi5g14280.3.p 4 QCDACEGEAATVVCCADEAALCARCDVQIHAAnklagkHQRLP 46 6*****************************6678888898877 PP
2	zf-B_box	31.3	4.3e-10	58	101	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 +++C+ +++k++ fC +++ l+C+dC l++H + H+ Bradi5g14280.3.p 58 PAPRCDVCQDKPAFVFCVEDRALFCADCDLSIHVQgalsgnhHR 101 5799*****************************55577777555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.182	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.68E-6	3	47	No hit	No description
Pfam	PF00643	6.8E-6	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	8.6E-10	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.086	57	105	IPR000315	B-box-type zinc finger
SMART	SM00336	6.6E-12	57	104	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.0E-7	58	98	IPR000315	B-box-type zinc finger
CDD	cd00021	3.32E-8	60	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009640	Biological Process	photomorphogenesis
GO:0005634	Cellular Component	nucleus
GO:0000989	Molecular Function	transcription factor activity, transcription factor binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MRIQCDACEG EAATVVCCAD EAALCARCDV QIHAANKLAG KHQRLPLHHD SPSTRSSPAP 60 RCDVCQDKPA FVFCVEDRAL FCADCDLSIH VQGALSGNHH RFLATGIRVG FAFTTVCSTH 120 AGERRPRAAP SKPPPAVVPA PAPAAAPQEV PSSPAYLSPS GWAVEDLLQF SDYESSGDKK 180 GSTSPLGFKE LEWFADIDGL FHHDSPLAPA TKGVSRTAAA EVPELFASPQ PAGNAGFYKA 240 AGARPSKKAR VELPDDDEDY LIVPDLG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g14280.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580039.1	0.0	B-box zinc finger protein 24
TrEMBL	I1IZ62	0.0	I1IZ62_BRADI; Uncharacterized protein
STRING	BRADI5G14280.2	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3202	33	68
Representative plant	OGRP5397	10	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	4e-64	DBB family protein

Link Out ? help Back to Top
Phytozome	Bradi5g14280.3.p
Entrez Gene	100838351