PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g13370.1.p
Common NameBRADI_5g13370, LOC100842196
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 795aa    MW: 90542.6 Da    PI: 8.6855
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g13370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1682.3e-2154139190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       kfY eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCka+++vk ++ +++wev  +eleHnH+++
  Bradi5g13370.1.p  54 KFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKYNTsENHWEVVFVELEHNHPCN 139
                       6****************99988..9999**************99887...8999*****************99***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1954139IPR004330FAR1 DNA binding domain
PfamPF105516.0E-24263356IPR018289MULE transposase domain
PfamPF044341.5E-6533576IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.73544580IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-4555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MDNLHSDPYT SSNLQLEFMD ASTSFENNNA VLVKHEVPNP GVGMTFETVD LAYKFYLEYG  60
YRAGFGVSKR TSHSVDGVKY RATFVCYKGG IARIKPGLKA RRRLVAKTGC KAMMVVKYNT  120
SENHWEVVFV ELEHNHPCNP EMVRFMMCFK DLPDWQREHR PFNAKTRLNP KIHSGRGRPP  180
NQNKDFMAKS FSQSNYSIEA AGKCGKLSFA EGDVEALLVF FDKMQAQNSN FFYNWDMDEE  240
GRLKNVCWVD ARSIAAYQHF CDVVCFDTVY LTYQFVIPLV AFLGINHHGQ FVLLGCGLLG  300
DESPETFAWL FKKWLKCMND KAPEAIITTH SRPVVKAVNE VFLNTRHRYN MWHIMKELPE  360
MSGRVEDKEA ISLRMKKVVY DTITSADFER EWVEMVHQYN LHDNRWLTTL FEERTKWVPA  420
YVKDTFWAGI STVRRSERLE AFFDGYITPK TTIKTFIEQF DTAMKLRSDR EAYDDFRSFQ  480
QRPQALSGLL FEEQFANAYT INMFQKFQDQ LKQLMNVNCT ELSRNGTIVT YTVTVIGKER  540
KFDYRVMYNS AEKEVWCICR SFQFKGILCS HALAVLKQEL VMLIPSKYIL DRWRKDYKCP  600
DESKGAPISP KAGKGTKPEN FREDKVDDLY NHGHQYFADI VEMGATDPDS MEYVLSVMKE  660
AKEKVRKFEE SRKEKRPVES PVSAGKTDGK SLKPTDEGVG GGTSVSTPAG TAAAMPSSTP  720
MSGPPTMMAV TSTPAAVPPG MFLVPMHSHM VFPPFTPGVP TAVPHTPPPP APTTNEMSAA  780
SNSSKKRKKR KGNN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1784788KKRKK
2784790KKRKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g13370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619440.0AK361944.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579967.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_024311986.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBLI1IYU20.0I1IYU2_BRADI; Uncharacterized protein
STRINGBRADI5G13370.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1623233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-111FAR1-related sequence 6