PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g13090.2.p
Common NameBRADI_5g13090, LOC100836604
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 753aa    MW: 80550.4 Da    PI: 6.6787
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g13090.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-30313370260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +Dgy+WrKYGqK+vk se+prsYY+Ct+++C+vkkkvers+ +++v+ei+Y+g+Hnh+k
  Bradi5g13090.2.p 313 EDGYSWRKYGQKQVKHSEYPRSYYKCTHQSCQVKKKVERSH-EGHVTEIIYKGTHNHPK 370
                       8****************************************.***************85 PP
2WRKY104.65.2e-33546604159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Bradi5g13090.2.p 546 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 604
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-28302371IPR003657WRKY domain
SuperFamilySSF1182902.62E-25306371IPR003657WRKY domain
PROSITE profilePS5081122.86307371IPR003657WRKY domain
SMARTSM007741.9E-33312370IPR003657WRKY domain
PfamPF031061.8E-23313369IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-37531606IPR003657WRKY domain
SuperFamilySSF1182907.98E-29538606IPR003657WRKY domain
PROSITE profilePS5081137.539541606IPR003657WRKY domain
SMARTSM007744.0E-38546605IPR003657WRKY domain
PfamPF031063.1E-25547604IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MVFVLKAFVE QLHAEMDGGH THIAMAMEQW KQHPNPGPEC LMPSFLTDQF PPDPLAEDGS  60
GNEAGFEKHG LSVAVGSPQD EGKPAQLTPH FGGRMSGSSS SLSERMQARN GFSVPKLSMP  120
FATPAGDDSE QSGVQPPIFT VPPGLSPASL LESPVFLSNA MGQASPTTGK LFMLGDADDN  180
NPTRIEAPSI EDGPAAFSFK SLDLKSSRYI AEEMKETLPS NQHPSLPSRD VPVKTETNIQ  240
ATQGANPLGN KVYFNGQELM KSSYHDSNKR NRLAPDTIVG RDSGSPPDHS QPAADSEANP  300
ATMATAATAT PAEDGYSWRK YGQKQVKHSE YPRSYYKCTH QSCQVKKKVE RSHEGHVTEI  360
IYKGTHNHPK PAAQGRRLPG VPQVHPFGDM DIAADNNNNN DNNGNAGGAT QQPNAEARPL  420
WHGGGGMGVQ DWRGGDGLEA TSSPGELCDS SASMQVHDGT ATRFGSPEGV DVTSAVSDEV  480
DGDDRVRAHG SMSQGHNQGA ADAGEGDELE SKRRKLESCA IEMSTASRAV REPRVVIQTT  540
SEVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTHPGCSVR KHVERASHDL KSVITTYEGK  600
HNHEVPAARN GGGHATSGSA AAQLAHARRP EPPSMAQDGL MMGRLGAPFG LPPRDPLGPM  660
SNFPYSLGVG GYASSGSLPS LPMPAAVEGL KLPMLSPCSL HPLFRHRQAM DQTAAGSGFR  720
VPKGEVKDES NNNSSASAYQ QMMNRLPLGH RM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36303607878Probable WRKY transcription factor 4
2lex_A2e-36303607878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g13090.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751041.10.0probable WRKY transcription factor 20 isoform X1
TrEMBLA0A2K2CGY30.0A0A2K2CGY3_BRADI; Uncharacterized protein
STRINGBRADI5G13090.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-111WRKY DNA-binding protein 2