PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g12407.4.p
Common NameBRADI_5g12407, LOC100822294
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 341aa    MW: 36609.1 Da    PI: 7.2319
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g12407.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.22.2e-55111371128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+++yL+kkv++ ++++  +++e+d++k+ePwdLp+ ++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdk+++
  Bradi5g12407.4.p  11 LPPGFRFHPTDEELITHYLAKKVADARFTA-FAVSEADLNKCEPWDLPSLARMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGKDKDIF 102
                       79*************************999.56***************8778899************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + kg+lvg+kktLvfy+grapkgek+ Wvmheyrl
  Bradi5g12407.4.p 103 RGKGTLVGMKKTLVFYTGRAPKGEKSGWVMHEYRL 137
                       *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-646157IPR003441NAC domain
PROSITE profilePS5100559.87311157IPR003441NAC domain
PfamPF023656.4E-3012137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEHEEQQAMD LPPGFRFHPT DEELITHYLA KKVADARFTA FAVSEADLNK CEPWDLPSLA  60
RMGEKEWYFF CLKDRKYPTG LRTNRATESG YWKATGKDKD IFRGKGTLVG MKKTLVFYTG  120
RAPKGEKSGW VMHEYRLHGK STASSKNEWV LCRVFKKSLV GVVASSASAS AAVKKGAMGM  180
EDTIGTSSMA AVGTTQLPPL LDMSGSGFVD PAAAHVTCFS NNALEAAGGH GHGHGHFFNS  240
ATADDHHHGG LGAASSSSTP FLANYAQYGL VQLLESSSGY RGLDMAAPCK QQQQPAAAAC  300
KEMLMSASQD TGLTSDVHPE ISSSSGGAQK FDHEPALWGY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5521578165NO APICAL MERISTEM PROTEIN
1ut4_B2e-5521578165NO APICAL MERISTEM PROTEIN
1ut7_A2e-5521578165NO APICAL MERISTEM PROTEIN
1ut7_B2e-5521578165NO APICAL MERISTEM PROTEIN
3swm_A2e-55215711168NAC domain-containing protein 19
3swm_B2e-55215711168NAC domain-containing protein 19
3swm_C2e-55215711168NAC domain-containing protein 19
3swm_D2e-55215711168NAC domain-containing protein 19
3swp_A2e-55215711168NAC domain-containing protein 19
3swp_B2e-55215711168NAC domain-containing protein 19
3swp_C2e-55215711168NAC domain-containing protein 19
3swp_D2e-55215711168NAC domain-containing protein 19
4dul_A2e-5521578165NAC domain-containing protein 19
4dul_B2e-5521578165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g12407.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0995271e-163FP099527.1 Phyllostachys edulis cDNA clone: bphyem118k06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579905.10.0NAC domain-containing protein 92
RefseqXP_010239990.10.0NAC domain-containing protein 92
TrEMBLA0A0Q3KS980.0A0A0Q3KS98_BRADI; Uncharacterized protein
STRINGBRADI5G12407.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.23e-86Arabidopsis NAC domain containing protein 87