PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g11330.6.p | ||||||||
Common Name | BRADI_5g11330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 658aa MW: 74413.3 Da PI: 6.9437 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.6 | 4.9e-19 | 68 | 163 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 +fY+ +Ak++GFs+r+++++ + + it+r fvC + g++ + + k +r+r+++r+gC+a l++ ++ +w+vt ++++HnHe Bradi5g11330.6.p 68 EFYSGFAKQCGFSIRRHRTEGKdGVGKGITRRYFVCHRAGNTPAKPFSdGAKPQRNRKSSRCGCQAYLRIGRDAgagAPEWRVTGFSNHHNHE 160 6**************99988774566779***********998887664677889*****************99877789************* PP FAR1 89 lap 91 l p Bradi5g11330.6.p 161 LLP 163 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-16 | 68 | 163 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.1E-16 | 254 | 345 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.891 | 531 | 567 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.3E-6 | 539 | 566 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.3E-5 | 542 | 569 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MPAKSAFLLE CGDPLEQRVS SSMEGTSSGE EEDEESPNKT SLSLETAAAD DSAPYIGQRF 60 LTHDEAYEFY SGFAKQCGFS IRRHRTEGKD GVGKGITRRY FVCHRAGNTP AKPFSDGAKP 120 QRNRKSSRCG CQAYLRIGRD AGAGAPEWRV TGFSNHHNHE LLPQDQQMMR IMELEKCVEP 180 GSLPFTEKDV SNLILSFRRF DQEESIDLLR MCRILKENDP NFMYDFTKMN DRLEHIAWSY 240 ASSIQSYEIF GDAVIFDTNH RLTALDMALG IWIGLNNYGM PCFFGCALLR EESVHSFAWA 300 LQVFLNFMNR KAPQTIMTDQ NVYLKEAVEK ELPNTKHALS IWLIAARFPS WFNSVLGKRY 360 NDWKNEFYRL YNMENTIDFD LGWSDMVNCY GLHGDRHIAT LFASRKHWAL PYLRGYFSAG 420 LTAIPEFSKS INAFVQQFMS AQTRISHFVE QVAIVVDDKD QAVGQQIMQE NLQNISFKTA 480 VPMEGHAAAV LTPFAFSKLH DELVAAAHYA SFHLEGNAFL VRHCTKTEGG CSVTWNQSEE 540 LVSCSCQLFE SSGILCRHAL HVLTSLNYLQ IPDHYLPVRW RRTQSRPPKS LSGIPDHGGA 600 SKRVKALQSM VSALVREAAK SDERMDIATQ EVSVLLSRIR QQPVLVNISG DSVHRQQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g11330.6.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024311980.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 isoform X2 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A2K2CGM7 | 0.0 | A0A2K2CGM7_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G11330.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g11330.6.p |
Publications ? help Back to Top | |||
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