PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g11330.5.p

Common Name

BRADI_5g11330

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 658aa MW: 74413.3 Da PI: 6.9437

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g11330.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.6	4.9e-19	68	163	1	91
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 +fY+ +Ak++GFs+r+++++ + + it+r fvC + g++ + + k +r+r+++r+gC+a l++ ++ +w+vt ++++HnHe Bradi5g11330.5.p 68 EFYSGFAKQCGFSIRRHRTEGKdGVGKGITRRYFVCHRAGNTPAKPFSdGAKPQRNRKSSRCGCQAYLRIGRDAgagAPEWRVTGFSNHHNHE 160 6************99988774566779*******998887664677889*************99877789*********** PP FAR1 89 lap 91 l p Bradi5g11330.5.p 161 LLP 163 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-16	68	163	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-16	254	345	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.891	531	567	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.3E-6	539	566	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-5	542	569	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MPAKSAFLLE CGDPLEQRVS SSMEGTSSGE EEDEESPNKT SLSLETAAAD DSAPYIGQRF 60 LTHDEAYEFY SGFAKQCGFS IRRHRTEGKD GVGKGITRRY FVCHRAGNTP AKPFSDGAKP 120 QRNRKSSRCG CQAYLRIGRD AGAGAPEWRV TGFSNHHNHE LLPQDQQMMR IMELEKCVEP 180 GSLPFTEKDV SNLILSFRRF DQEESIDLLR MCRILKENDP NFMYDFTKMN DRLEHIAWSY 240 ASSIQSYEIF GDAVIFDTNH RLTALDMALG IWIGLNNYGM PCFFGCALLR EESVHSFAWA 300 LQVFLNFMNR KAPQTIMTDQ NVYLKEAVEK ELPNTKHALS IWLIAARFPS WFNSVLGKRY 360 NDWKNEFYRL YNMENTIDFD LGWSDMVNCY GLHGDRHIAT LFASRKHWAL PYLRGYFSAG 420 LTAIPEFSKS INAFVQQFMS AQTRISHFVE QVAIVVDDKD QAVGQQIMQE NLQNISFKTA 480 VPMEGHAAAV LTPFAFSKLH DELVAAAHYA SFHLEGNAFL VRHCTKTEGG CSVTWNQSEE 540 LVSCSCQLFE SSGILCRHAL HVLTSLNYLQ IPDHYLPVRW RRTQSRPPKS LSGIPDHGGA 600 SKRVKALQSM VSALVREAAK SDERMDIATQ EVSVLLSRIR QQPVLVNISG DSVHRQQ*

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MPAKSAFLLE CGDPLEQRVS SSMEGTSSGE EEDEESPNKT SLSLETAAAD DSAPYIGQRF  60
LTHDEAYEFY SGFAKQCGFS IRRHRTEGKD GVGKGITRRY FVCHRAGNTP AKPFSDGAKP  120
QRNRKSSRCG CQAYLRIGRD AGAGAPEWRV TGFSNHHNHE LLPQDQQMMR IMELEKCVEP  180
GSLPFTEKDV SNLILSFRRF DQEESIDLLR MCRILKENDP NFMYDFTKMN DRLEHIAWSY  240
ASSIQSYEIF GDAVIFDTNH RLTALDMALG IWIGLNNYGM PCFFGCALLR EESVHSFAWA  300
LQVFLNFMNR KAPQTIMTDQ NVYLKEAVEK ELPNTKHALS IWLIAARFPS WFNSVLGKRY  360
NDWKNEFYRL YNMENTIDFD LGWSDMVNCY GLHGDRHIAT LFASRKHWAL PYLRGYFSAG  420
LTAIPEFSKS INAFVQQFMS AQTRISHFVE QVAIVVDDKD QAVGQQIMQE NLQNISFKTA  480
VPMEGHAAAV LTPFAFSKLH DELVAAAHYA SFHLEGNAFL VRHCTKTEGG CSVTWNQSEE  540
LVSCSCQLFE SSGILCRHAL HVLTSLNYLQ IPDHYLPVRW RRTQSRPPKS LSGIPDHGGA  600
SKRVKALQSM VSALVREAAK SDERMDIATQ EVSVLLSRIR QQPVLVNISG DSVHRQQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g11330.5.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024311980.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2K2CGM7	0.0	A0A2K2CGM7_BRADI; Uncharacterized protein
STRING	BRADI5G11330.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Bradi5g11330.5.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]