PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g11330.3.p | ||||||||
Common Name | BRADI_5g11330, LOC100833148 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 687aa MW: 77678.1 Da PI: 7.2273 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.5 | 5.2e-19 | 68 | 163 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 +fY+ +Ak++GFs+r+++++ + + it+r fvC + g++ + + k +r+r+++r+gC+a l++ ++ +w+vt ++++HnHe Bradi5g11330.3.p 68 EFYSGFAKQCGFSIRRHRTEGKdGVGKGITRRYFVCHRAGNTPAKPFSdGAKPQRNRKSSRCGCQAYLRIGRDAgagAPEWRVTGFSNHHNHE 160 6**************99988774566779***********998887664677889*****************99877789************* PP FAR1 89 lap 91 l p Bradi5g11330.3.p 161 LLP 163 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-16 | 68 | 163 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.4E-16 | 283 | 374 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.891 | 560 | 596 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.5E-6 | 568 | 595 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.3E-5 | 571 | 598 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 687 aa Download sequence Send to blast |
MPAKSAFLLE CGDPLEQRVS SSMEGTSSGE EEDEESPNKT SLSLETAAAD DSAPYIGQRF 60 LTHDEAYEFY SGFAKQCGFS IRRHRTEGKD GVGKGITRRY FVCHRAGNTP AKPFSDGAKP 120 QRNRKSSRCG CQAYLRIGRD AGAGAPEWRV TGFSNHHNHE LLPQDQVRFL PAYRVISDSD 180 RGRILMFAKS GISVQQMMRI MELEKCVEPG SLPFTEKDVS NLILSFRRFD QEESIDLLRM 240 CRILKENDPN FMYDFTKMND RLEHIAWSYA SSIQSYEIFG DAVIFDTNHR LTALDMALGI 300 WIGLNNYGMP CFFGCALLRE ESVHSFAWAL QVFLNFMNRK APQTIMTDQN VYLKEAVEKE 360 LPNTKHALSI WLIAARFPSW FNSVLGKRYN DWKNEFYRLY NMENTIDFDL GWSDMVNCYG 420 LHGDRHIATL FASRKHWALP YLRGYFSAGL TAIPEFSKSI NAFVQQFMSA QTRISHFVEQ 480 VAIVVDDKDQ AVGQQIMQEN LQNISFKTAV PMEGHAAAVL TPFAFSKLHD ELVAAAHYAS 540 FHLEGNAFLV RHCTKTEGGC SVTWNQSEEL VSCSCQLFES SGILCRHALH VLTSLNYLQI 600 PDHYLPVRWR RTQSRPPKSL SGIPDHGGAS KRVKALQSMV SALVREAAKS DERMDIATQE 660 VSVLLSRIRQ QPVLVNISGD SVHRQQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g11330.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581280.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 isoform X1 | ||||
Refseq | XP_010239957.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 isoform X1 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | I1IY68 | 0.0 | I1IY68_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G11330.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15171 | 15 | 16 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g11330.3.p |
Entrez Gene | 100833148 |
Publications ? help Back to Top | |||
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