PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g10370.2.p | ||||||||
Common Name | BRADI_5g10370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HB-other | ||||||||
Protein Properties | Length: 182aa MW: 20156.9 Da PI: 10.3807 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.5e-18 | 44 | 95 | 6 | 57 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++++q+ +Le++F++++ p+++ ++L+ klg+ +qVk+WFqNrR +kk Bradi5g10370.2.p 44 RHSRDQVAQLEAVFQQCPRPDEQVQQDLSVKLGMGANQVKFWFQNRRSAKKK 95 6799*******************************************88876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-17 | 24 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.24E-16 | 28 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.738 | 36 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 39 | 100 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.74E-13 | 40 | 90 | No hit | No description |
Pfam | PF00046 | 3.6E-15 | 44 | 95 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 71 | 94 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MDGLAFDPNT NVGNTDGVDA VAAGKDNNVG ATDSQRTATK RFKRHSRDQV AQLEAVFQQC 60 PRPDEQVQQD LSVKLGMGAN QVKFWFQNRR SAKKKKQKQE EVKLLREESW RLHVENQTIK 120 TALFKKTCLK CGVPMVHVVG DTPEKRRLLA ENAKLKNDLL HANAFLNMIS GGSEGAPSSR 180 A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 94 | RRSAKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g10370.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024311210.1 | 1e-133 | homeobox-leucine zipper protein ROC5 | ||||
TrEMBL | A0A2K2CGE8 | 1e-132 | A0A2K2CGE8_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G10370.1 | 1e-131 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16772 | 5 | 12 | Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.2 | 7e-23 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g10370.2.p |