PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g10107.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 263aa    MW: 26693.7 Da    PI: 9.1588
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g10107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-2083132255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++aa+++++g
  Bradi5g10107.1.p  83 KYRGVRRRP-WGKWAAEIRDPQ----KaARVWLGTFATAEDAARAYDAAALRFRG 132
                       8********.**********93....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-3382141IPR001471AP2/ERF domain
PROSITE profilePS5103225.89783140IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2383141IPR016177DNA-binding domain
PfamPF008474.5E-1483132IPR001471AP2/ERF domain
CDDcd000186.15E-2183141No hitNo description
SMARTSM003809.4E-3783146IPR001471AP2/ERF domain
PRINTSPR003671.5E-118495IPR001471AP2/ERF domain
PRINTSPR003671.5E-11106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MLPPPTPAPA AGAFSEQALA AETAAIVSAL THVISSGRGG PPCSAPPLAM PGVQAQQLLY  60
ASSSSSSCQG TTEPQGMPAS ARKYRGVRRR PWGKWAAEIR DPQKAARVWL GTFATAEDAA  120
RAYDAAALRF RGSRAKLNFP EDAAAATARR ATDAAAAASS KPAAVLESQQ QQGNDVMDYL  180
EYSRILEGTT GPSDFLLGGG EGNGNGRFLG SWSIGTAPAS SGASASLAGA GPASASPLFQ  240
CGSGSGSSWK QSSMDGIYQR AI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2479140163ATERF1
3gcc_A7e-2479140163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g10107.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126129e-77CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751146.21e-141ethylene-responsive transcription factor ERF110
TrEMBLA0A2K2CGC20.0A0A2K2CGC2_BRADI; Uncharacterized protein
STRINGGRMZM2G175525_P011e-59(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-25ERF family protein