PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g02880.1.p

Common Name

BRADI_5g02880, LOC100844745

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

TCP

Protein Properties

Length: 178aa MW: 18371.8 Da PI: 5.7546

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g02880.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.8	1.6e-33	53	122	3	72
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 ++ +r+s++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ s++++ Bradi5g02880.1.p 53 PRARRSSDRHAKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVSPEEA 122 6889***********************************************************8887743 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	24.717	58	112	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.1E-26	58	119	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MMSSSPSELV LYNLVPTQTL NPTAAPPPPP PTNDPAADLS IATATPAAST GRPRARRSSD 60 RHAKVAGRGR RVRIPAMVAA RVFQLTRELG HRTDGETIEW LLRQAEPSII AATGTGVSPE 120 EAPPAAVPIG SAAAVQGAPF VQVPYYTALL MQPPTADEPP VAPADASASV TVAEENN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g02880.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP092536	1e-118	FP092536.1 Phyllostachys edulis cDNA clone: bphylf049m10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003581062.1	1e-121	transcription factor PCF1
Swissprot	O23875	5e-68	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	A0A0Q3E6C7	1e-120	A0A0Q3E6C7_BRADI; Uncharacterized protein
STRING	BRADI5G02880.1	1e-119	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14172	26	27
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-32	TCP family protein

Link Out ? help Back to Top
Phytozome	Bradi5g02880.1.p
Entrez Gene	100844745