PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g45290.4.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 405aa    MW: 45121.8 Da    PI: 8.6177
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g45290.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.1e-32187243360
                       -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d+++ ei+Y+geHnh+k
  Bradi4g45290.4.p 187 DGYNWRKYGQKQVKGSEFPRSYYKCTYPTCPVKRKVETTL-DGQIAEIVYNGEHNHPK 243
                       9***************************************.***************85 PP
2WRKY87.89.4e-28344398258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       +D ++WrKYGqK v+g+ fprsYYrC++a+C+++k vers+ d + +++tYeg+Hnh
  Bradi4g45290.4.p 344 EDAFRWRKYGQKAVNGNLFPRSYYRCSTARCNARKFVERSS-D-NSLVTTYEGRHNH 398
                       7****************************************.4.567799******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.986180244IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-27181244IPR003657WRKY domain
SuperFamilySSF1182902.09E-24183244IPR003657WRKY domain
SMARTSM007742.3E-34185243IPR003657WRKY domain
PfamPF031062.5E-24187242IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-25332398IPR003657WRKY domain
SuperFamilySSF1182902.62E-22338398IPR003657WRKY domain
PROSITE profilePS5081124.134338401IPR003657WRKY domain
SMARTSM007744.6E-29343400IPR003657WRKY domain
PfamPF031061.0E-22344398IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MHTRSTTPSL SSFLPTLQLN FLCCSPIAYL QLWQSTRLKD LRYVCEPFIP AFFSLSLKLL  60
IHAQGEKWKM PSQEKITAVK PVASRPFSSF SSFSKLLKDF TTTGSTPITS PEETVIVRRP  120
KATRFASAPS DLTTGITATT LQDGGSDTTH EQMVVNTEQA VSCDDHQTVF HNINKPIHSA  180
RNRLSYDGYN WRKYGQKQVK GSEFPRSYYK CTYPTCPVKR KVETTLDGQI AEIVYNGEHN  240
HPKPHLSKKP VSSTGTEVVI ADLYGSNDAG AESRLGGCNG LSLIGSNVVA DTFRRCCDCF  300
DELGENSLVC DCKGSRKEEQ LNGLGAHVEA ARVFQASTEY ESSEDAFRWR KYGQKAVNGN  360
LFPRSYYRCS TARCNARKFV ERSSDNSLVT TYEGRHNHIA ERLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-19187398877Probable WRKY transcription factor 4
2lex_A2e-19187398877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g45290.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2428551e-55AK242855.1 Oryza sativa Japonica Group cDNA, clone: J090073J20, full insert sequence.
GenBankAP0149671e-55AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAP0149681e-55AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAY3418601e-55AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds.
GenBankBX0004961e-55BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005031e-55BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0725481e-55BX072548.4 Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126201e-55CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311123.10.0WRKY transcription factor 44
TrEMBLA0A2K2CUC40.0A0A2K2CUC4_BRADI; Uncharacterized protein
STRINGBRADI4G45290.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Representative plantOGRP1262735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.16e-57WRKY family protein