PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g44370.2.p
Common NameBRADI_4g44370, LOC100839746
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 305aa    MW: 33631.4 Da    PI: 6.3169
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g44370.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.38.4e-20143211359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.........STTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.........dpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+++++++prsYYrCt+    gC+++k v+++++         d+ ++ ++Y g+H+++
  Bradi4g44370.2.p 143 DGHQWRKYGQKVINNAKHPRSYYRCTYGqeqGCKATKTVQQKDDngagavyedDQVMFAVVYYGQHTCK 211
                       9*************************977789********9875222222222667999*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.7E-25134213IPR003657WRKY domain
SuperFamilySSF1182901.7E-21135213IPR003657WRKY domain
SMARTSM007741.8E-30141212IPR003657WRKY domain
PfamPF031063.0E-24143211IPR003657WRKY domain
PROSITE profilePS5081116.168143213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKVEAKNSSR HPSPRGRHGS SPSQSQVEAL REMARGQSLV AQLRAVVLPA LVDDERAGVV  60
AQMFQSVLDC SAKAMAALKL CQIENQARAD ADGVLMADDK KRSVKKVVVV SDDGDNAKPH  120
RQRKRRRLAD ECVTLETPVP HYDGHQWRKY GQKVINNAKH PRSYYRCTYG QEQGCKATKT  180
VQQKDDNGAG AVYEDDQVMF AVVYYGQHTC KPPSSSDTDG TVVDSDSRCS SNISVTCTSV  240
AVIDHHRQSS LESSLLDMAE EDLATEEYDQ LFDVAAYEPL DSDPAWEMDD AHGHGHGILK  300
FGHW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-141432111069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122126RKRRR
2123127KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g44370.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577134.30.0probable WRKY transcription factor 70
TrEMBLA0A0Q3HWA10.0A0A0Q3HWA1_BRADI; Uncharacterized protein
STRINGBRADI4G44370.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Representative plantOGRP1147447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-18WRKY DNA-binding protein 70