PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g44342.1.p
Common NameBRADI_4g44342, LOC104584806
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 335aa    MW: 35849.9 Da    PI: 6.6446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g44342.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.85.1e-19131174343
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae 43 
                       Dgy+WrKYGqK+++ +++prsYYrCt +   gCp+k+ v+r+++
  Bradi4g44342.1.p 131 DGYQWRKYGQKHIEAARYPRSYYRCTNStdqGCPAKRTVQRNED 174
                       9*************************988889*********984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-22119201IPR003657WRKY domain
SuperFamilySSF1182909.68E-19122201IPR003657WRKY domain
SMARTSM007744.2E-26129201IPR003657WRKY domain
PROSITE profilePS5081118.418131172IPR003657WRKY domain
PfamPF031067.3E-22131200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMPAPEKEML QRRERELLAQ LHELLYSPSS SSSPAPSAGE PSWTSSSSGI FNNMAADLQL  60
TDECSPVKKP AAPCVAGRRR GSKRRDLEVE EQVLQEEHGG CGGGARAKRR KKKKEAGGAT  120
RTLVTTVPDF DGYQWRKYGQ KHIEAARYPR SYYRCTNSTD QGCPAKRTVQ RNEDGADGSD  180
GGTKAAPKYT VVYISAHTCK TTDSALVPPV ILETTVPDVV PASSSSCSGS TSCITGTTTT  240
NSPVSSSDAT TWSERRGCSS KFAVDDDNLD YSCWDASTVA VRPSAAALLA QEMVDDFAGP  300
IRSPVHAVAG GDWTNDFFVG EPPCVLNSCQ LFGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-121312001069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113KRRKKKK
2108114RRKKKKE
3109114RKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g44342.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238804.10.0probable WRKY transcription factor 29
TrEMBLA0A0Q3J2J60.0A0A0Q3J2J6_BRADI; Uncharacterized protein
STRINGBRADI4G44342.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Representative plantOGRP1314045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-15WRKY DNA-binding protein 70