PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g42180.1.p

Common Name

BRADI_4g42180, LOC100827613

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 264aa MW: 28733.1 Da PI: 8.2441

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g42180.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.6	1.4e-37	23	159	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkya.tgkrknratksgyWkatg 87 +pGfrF Pt+eel+ +yL++++++ +l++vi+ vd+y ++P++L++ + + + ++w+fF++r+ + + +g r+ r++ sgyWkatg Bradi4g42180.1.p 23 APGFRFYPTEEELLGFYLRHRLSAAAarPQLHRVIPVVDVYAHHPSQLRSmageASARDAEQWFFFCPRAPERElRGGRPGRTAPSGYWKATG 115 69*****************9888766788889**********84345322335669**98776648************* PP NAM 88 kdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127 + v+s+ ++el+g+k+t+vfy+grap+g kt+W m+ey+ Bradi4g42180.1.p 116 SPSYVFSSssssSSELIGVKRTMVFYHGRAPTGAKTRWKMNEYK 159 **9977777777*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	44.173	22	193	IPR003441	NAC domain
SuperFamily	SSF101941	6.15E-40	22	192	IPR003441	NAC domain
Pfam	PF02365	9.1E-22	24	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MATTRMSSSA GEEEEEELAL AAAPGFRFYP TEEELLGFYL RHRLSAAAAR PQLHRVIPVV 60 DVYAHHPSQL RSMAGEASAR DAEQWFFFCP RAPERELRGG RPGRTAPSGY WKATGSPSYV 120 FSSSSSSSSE LIGVKRTMVF YHGRAPTGAK TRWKMNEYKA IAHDDPVAAA HLQPTTAPPK 180 LRNEFSVCRV YVSTGTLRSF DRRPLNPPGA GGHGQAQVQA YQHQSVPSAA ALDTNLAENS 240 RVFSNSLIAA AAASDVLDFD MDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-27	8	191	2	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-27	8	191	2	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-27	8	191	2	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-27	8	191	2	163	NO APICAL MERISTEM PROTEIN
4dul_A	2e-27	8	191	2	163	NAC domain-containing protein 19
4dul_B	2e-27	8	191	2	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g42180.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577031.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	3e-66	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0Q3HFE8	0.0	A0A0Q3HFE8_BRADI; Uncharacterized protein
STRING	BRADI4G42180.1	1e-165	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140
Representative plant	OGRP2278	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-56	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Bradi4g42180.1.p
Entrez Gene	100827613

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]