PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g41830.5.p

Common Name

BRADI_4g41830, LOC100835589

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 430aa MW: 49105.8 Da PI: 6.0907

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g41830.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.8	2e-25	106	202	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt+ +v++Li+a ++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ t++++ + +++ Bradi4g41830.5.p 106 KWTDLMVKLLITAASYTGEDPGADLgggrkscammQKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGtTCRVVANPALL 198 7*******************8644445667788******************************************77****** PP trihelix 83 dqle 86 d+++ Bradi4g41830.5.p 199 DHMD 202 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.0E-19	104	228	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MEGNNLPSGN FMQETVRKPM QMRSLNSGNQ GFNSQIPVLF PMPMNQVTDS DHLSELQFGE 60 RGKSDHHHHH QTKDSMSDDE EHDLNEDATD GHIGKGKKGS AWQRMKWTDL MVKLLITAAS 120 YTGEDPGADL GGGRKSCAMM QKKGKWKAIS KVMGERGCNV SPQQCEDKFN DLNKRYKRLT 180 DILGRGTTCR VVANPALLDH MDNLSDKLKD DARKILSSRH LFYEEMCSYH NNNRVSLPED 240 PALQRSLQLA LRCKEENDLK RGVSGDADED DQTAESDSEE DNDEEHHPTH SSKGALPMHK 300 RMRHMTDHED VGFGNSSSSH DCSERTNLHG IALDINKVFL DGTSSALAQK DLALQLEQLE 360 KYRFQIEIQE LELAEQRFKW EQFCKKKDRE LERMELESEQ MRVENKRLAL EVRRKELEFE 420 LKVKGNDNH*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MEGNNLPSGN FMQETVRKPM QMRSLNSGNQ GFNSQIPVLF PMPMNQVTDS DHLSELQFGE  60
RGKSDHHHHH QTKDSMSDDE EHDLNEDATD GHIGKGKKGS AWQRMKWTDL MVKLLITAAS  120
YTGEDPGADL GGGRKSCAMM QKKGKWKAIS KVMGERGCNV SPQQCEDKFN DLNKRYKRLT  180
DILGRGTTCR VVANPALLDH MDNLSDKLKD DARKILSSRH LFYEEMCSYH NNNRVSLPED  240
PALQRSLQLA LRCKEENDLK RGVSGDADED DQTAESDSEE DNDEEHHPTH SSKGALPMHK  300
RMRHMTDHED VGFGNSSSSH DCSERTNLHG IALDINKVFL DGTSSALAQK DLALQLEQLE  360
KYRFQIEIQE LELAEQRFKW EQFCKKKDRE LERMELESEQ MRVENKRLAL EVRRKELEFE  420
LKVKGNDNH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g41830.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003578873.1	0.0	uncharacterized protein LOC100835589
Refseq	XP_010238688.1	0.0	uncharacterized protein LOC100835589
TrEMBL	I1IU47	0.0	I1IU47_BRADI; Uncharacterized protein
STRING	BRADI4G41830.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86
Representative plant	OGRP2796	13	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	9e-95	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Bradi4g41830.5.p
Entrez Gene	100835589