PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g39630.1.p
Common NameBRADI_4g39630, LOC100822385
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 390aa    MW: 41405.4 Da    PI: 7.0275
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g39630.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.11.3e-20291353163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkr+rrkq+NR +ArrsR+RK+ae+eeL++++++L++eN +L++e+++ +ke+++l s++
  Bradi4g39630.1.p 291 ERELKRQRRKQSNRDSARRSRLRKQAECEELAQRAEVLKQENATLRDEVNRVRKEYDELISKN 353
                       89********************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.8E-30197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.5E-36140264No hitNo description
Gene3DG3DSA:1.20.5.1704.0E-19285349No hitNo description
SMARTSM003386.8E-21291355IPR004827Basic-leucine zipper domain
PfamPF001702.8E-19291353IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.082293356IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-10294350No hitNo description
CDDcd147023.01E-25296347No hitNo description
PROSITE patternPS000360298313IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGSSGADTPT KASKASTPQE QQPPATSSAA TPVVYPDWTN FQGYPPIPPH GFFPSPVVSS  60
PQGHPYMWGA QPMMQPYGTP PYVMYPPGGI YAHPSMPPGA HPFAPYAMAS ANGNADATGT  120
ATAAAPSAGE TDGKSSEGKE KSPIKSSKGS LGSLNMITGK NCVEHGKTSG ASANGAISQS  180
GESGSESSSE GSEPNSQNDS HHKESGQEQD GEIRSSQNGV SRSPSQAKLK QTMAIMPMPS  240
SGSMPGPTTN LNIGMDYWAN TASSPPAAHG KATPTAVPGT AVPTEPWMQD ERELKRQRRK  300
QSNRDSARRS RLRKQAECEE LAQRAEVLKQ ENATLRDEVN RVRKEYDELI SKNNSLKDKL  360
GDKEHKTDDA ELDNKPQRSG DDSQKKETN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307313RRSRLRK
2307314RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g39630.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1944570.0FJ194457.1 Triticum aestivum bZip type transcription factor bZIP1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578746.10.0transcription factor HBP-1a
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLI1ITE80.0I1ITE8_BRADI; Uncharacterized protein
STRINGBRADI4G39630.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.12e-95basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]