PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g39420.1.p | ||||||||
Common Name | BRADI_4g39420, LOC104584744 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 259aa MW: 27844.2 Da PI: 10.1889 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70 | 2.1e-22 | 19 | 66 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+++ rqv fskRr+g++KKA ELSvLC+++va ++fs+ gk y + Bradi4g39420.1.p 19 RIDSDQARQVCFSKRRAGLFKKAGELSVLCGVQVAAVVFSPAGKAYSF 66 8*******************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-32 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-27 | 10 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.156 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.03E-36 | 11 | 79 | No hit | No description |
PRINTS | PR00404 | 2.6E-19 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-24 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-19 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-19 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSRRRPTTRL GRQKIKIRRI DSDQARQVCF SKRRAGLFKK AGELSVLCGV QVAAVVFSPA 60 GKAYSFGTPS VDAVLDRFLG RGRPAAGTGG RRAAAGKSAV IEELFRQYAE LLVQVDVEKK 120 RAEALRKELK AAAAAPGAPK WLDCECELSE LSEAELVDFA AALVEVQAAV QGCADERLRH 180 ALLANANTWA ANVNAARATD AITSAAARMM MMPPQPQQQL GGFGFMEIQA QQLQAMEMMI 240 QGFGPQQGAR FLGPPPPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-16 | 10 | 84 | 1 | 75 | MEF2 CHIMERA |
6byy_B | 5e-16 | 10 | 84 | 1 | 75 | MEF2 CHIMERA |
6byy_C | 5e-16 | 10 | 84 | 1 | 75 | MEF2 CHIMERA |
6byy_D | 5e-16 | 10 | 84 | 1 | 75 | MEF2 CHIMERA |
6bz1_A | 5e-16 | 10 | 84 | 1 | 75 | MEF2 CHIMERA |
6bz1_B | 5e-16 | 10 | 84 | 1 | 75 | MEF2 CHIMERA |
6bz1_C | 5e-16 | 10 | 84 | 1 | 75 | MEF2 CHIMERA |
6bz1_D | 5e-16 | 10 | 84 | 1 | 75 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 9 | RRRPTTRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g39420.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469346 | 0.0 | KF469346.1 Brachypodium distachyon MADS-box transcription factor 52 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304660.1 | 0.0 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | I1ITC5 | 0.0 | I1ITC5_BRADI; MADS-box transcription factor 52 | ||||
STRING | BRADI4G39420.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28460.1 | 2e-24 | AGAMOUS-like 59 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g39420.1.p |
Entrez Gene | 104584744 |
Publications ? help Back to Top | |||
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