PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g39130.2.p
Common NameBRADI_4g39130, LOC100839458
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 1228aa    MW: 136733 Da    PI: 7.9908
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g39130.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002511081131122
                        EEET..TTTEEESSHHHHHHHHHH CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                        ++C    C++sFs++ +L  H r 
  Bradi4g39130.2.p 1108 FSCDieGCDMSFSTQQDLLLHKRD 1131
                        899999***************985 PP
2zf-C2H211.20.001211621185223
                        EET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                        kC+  dC+k+F+ +   + H+r+H
  Bradi4g39130.2.p 1162 KCTfeDCKKTFKWPWAKTEHMRVH 1185
                        79999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5118416.451186IPR003347JmjC domain
PfamPF023731.7E-171469IPR003347JmjC domain
SuperFamilySSF511971.21E-102384No hitNo description
SMARTSM003559.111081130IPR015880Zinc finger, C2H2-like
SMARTSM003551511311155IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9711311160IPR007087Zinc finger, C2H2
PROSITE patternPS00028011331155IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-411331159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.76E-1411421198No hitNo description
Gene3DG3DSA:3.30.160.606.9E-1011601185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.0311611190IPR007087Zinc finger, C2H2
SMARTSM003550.00111611185IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011631185IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-911861214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.3911911217IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.38811911222IPR007087Zinc finger, C2H2
PROSITE patternPS00028011931217IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1228 aa     Download sequence    Send to blast
MMNENFIFII VAFQTLNQKT TVLSPAVLLS AGVPCCRLVQ NPGEFVITFP GAYHSGFSHG  60
FNCGEATNIA TPLWLQVAKE AAIRRASTNC GPMVSHYQLL YELALSLRLR EPKDFHTIPR  120
SSRLRDKKKK DEADIIVKEK FVGNVIENNN LLSTLLDKTS CIIVPEIVFP RPFFSKMMVP  180
EVTVKQSLAA GHCSISRQAV ESMSVDVALD KIIGVDNVSG PQSVTEASFY ACNRKLYETK  240
YGEPDTAALG LSASEMQNGV TDKHRLHREG GLLDHGRLPC VQCGILSFAC VAIIQPKEAA  300
VQFVMSREGI SSSAKVGELS KSDSISNWIS GNHEMVPPQG QASGARSVNL AQVSDNCRQL  360
YDRNTNGCTS ALGLLASMYE SSDSEEEKSD NESTDREKHA AANQGKDIQF LGTSDSCPNT  420
LQPERANLHL YEEGCETRNA ASLMKPIKHN SMPQTWSSKD TDIGHFARLG EPGTSYEQCS  480
VYLDLVDDLT VSGVKASPDT CVSKAKSSIE PDVLTMLKYN KDSCRMHVFC LEHALETWTQ  540
LQDIGGANVM LLCHPEYPRA ESAAKLIAEE LGLKHDWKDI TFEEATKDDI RRIQLALQDE  600
DAEPASSDWA VKMGINIYYS AKQSKSPLYS KQIPYNSIIY EAFGQENPDT LTDYGEQTSG  660
ATKKRVVGWW CGKAWMSNQA HPFLARSKAM FAAKSHDKVQ DEPSTLGNIM ISRGPSKRIS  720
RKKRGDSMEK SGAKKKRCSA NDETALHGGS LGTNTETISD QSENFNVHNK HEGDEFEEAP  780
STQQYQQHKL QNVDMKLSSK KQKSDKRSSN LHEVCYEDND LDCWLNIDTG DNAAIGNLDN  840
SPQGLDDEKA KSPGKLQGSK RKSSKGKASD DSLNGDKKLQ KMNKKSISRK PNNGKINRQF  900
REDYNEDNTL DNLLDVESGV EATLGNLDKF PKEKTADVKV EPRGKRQSGK DDKRSSNFRG  960
EDNDVDCWHA MDSGDNATTG NLDNNQQQRL EAVKLKSGGK SQSCKRKSSK GKTNDDPPDG  1020
DKKLQVVSTK SSSRKQKVDS INRQSREGPD EDNPVDCLPK DEDEASRDNC HKVSEEQTDD  1080
VKVKSRVKTQ TVKRKTSKRQ AGDKAAKFSC DIEGCDMSFS TQQDLLLHKR DICPVKGCKK  1140
KFFCHKYLLQ HRKVHMDERP LKCTFEDCKK TFKWPWAKTE HMRVHTGARP YKCKEPGCTQ  1200
TFRFVSDFSR HKRKTGHSID KKNKEST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A5e-561105122520140Lysine-specific demethylase REF6
6a58_A5e-561105122520140Lysine-specific demethylase REF6
6a59_A5e-561105122520140Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RDKKKKD
2721736KKRGDSMEKSGAKKKR
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g39130.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238558.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7128e-67JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A2K2CT830.0A0A2K2CT83_BRADI; Uncharacterized protein
STRINGBRADI4G39130.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-59relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]