PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g39130.1.p
Common NameBRADI_4g39130, LOC100839458
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 1495aa    MW: 166278 Da    PI: 7.9717
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g39130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003113751398122
                        EEET..TTTEEESSHHHHHHHHHH CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                        ++C    C++sFs++ +L  H r 
  Bradi4g39130.1.p 1375 FSCDieGCDMSFSTQQDLLLHKRD 1398
                        899999***************985 PP
2zf-C2H210.90.001414291452223
                        EET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                        kC+  dC+k+F+ +   + H+r+H
  Bradi4g39130.1.p 1429 KCTfeDCKKTFKWPWAKTEHMRVH 1452
                        79999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005456.4E-161758IPR003349JmjN domain
PROSITE profilePS5118313.551859IPR003349JmjN domain
PfamPF023758.9E-131952IPR003349JmjN domain
SMARTSM005589.1E-44184353IPR003347JmjC domain
PROSITE profilePS5118433.76184353IPR003347JmjC domain
SuperFamilySSF511978.51E-24199351No hitNo description
PfamPF023731.6E-35217336IPR003347JmjC domain
SMARTSM003559.113751397IPR015880Zinc finger, C2H2-like
SMARTSM003551513981422IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9713981427IPR007087Zinc finger, C2H2
PROSITE patternPS00028014001422IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.3E-414001426IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-1314091465No hitNo description
Gene3DG3DSA:3.30.160.608.6E-1014271452IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00114281452IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0314281457IPR007087Zinc finger, C2H2
PROSITE patternPS00028014301452IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-914531481IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.3914581484IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.38814581489IPR007087Zinc finger, C2H2
PROSITE patternPS00028014601484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1495 aa     Download sequence    Send to blast
MSLPPVDPPE WLRTLPEAPE YRPTLAEFVD PIAYILKIER DASRYGICKI VPPLPAPSRE  60
ATVQRLKASF ASNAAATAPG DASPTFPTRL QQVGLSTKNR RGANRRVWES GERYTLEAFR  120
TKARDMELPR HATPPKHATA LQLEALFWGA CAARPFNVEY GNDMPGSGFA EPEGTGDAAP  180
APRDVGDTDW NMRVAPRARG SLLRAMSRDV AGVTSPMLYV AMLYSWFAWH VEDHELHSLN  240
YLHFGKPKTW YGVPRDAMLA FEDAVRVYGY GDDLNAIMAF QTLNQKTTVL SPAVLLSAGV  300
PCCRLVQNPG EFVITFPGAY HSGFSHGFNC GEATNIATPL WLQVAKEAAI RRASTNCGPM  360
VSHYQLLYEL ALSLRLREPK DFHTIPRSSR LRDKKKKDEA DIIVKEKFVG NVIENNNLLS  420
TLLDKTSCII VPEIVFPRPF FSKMMVPEVT VKQSLAAGHC SISRQAVESM SVDVALDKII  480
GVDNVSGPQS VTEASFYACN RKLYETKYGE PDTAALGLSA SEMQNGVTDK HRLHREGGLL  540
DHGRLPCVQC GILSFACVAI IQPKEAAVQF VMSREGISSS AKVGELSKSD SISNWISGNH  600
EMVPPQGQAS GARSVNLAQV SDNCRQLYDR NTNGCTSALG LLASMYESSD SEEEKSDNES  660
TDREKHAAAN QGKDIQFLGT SDSCPNTLQP ERANLHLYEE GCETRNAASL MKPIKHNSMP  720
QTWSSKDTDI GHFARLGEPG TSYEQCSVYL DLVDDLTVSG VKASPDTCVS KAKSSIEPDV  780
LTMLKYNKDS CRMHVFCLEH ALETWTQLQD IGGANVMLLC HPEYPRAESA AKLIAEELGL  840
KHDWKDITFE EATKDDIRRI QLALQDEDAE PASSDWAVKM GINIYYSAKQ SKSPLYSKQI  900
PYNSIIYEAF GQENPDTLTD YGEQTSGATK KRVVGWWCGK AWMSNQAHPF LARSKAMFAA  960
KSHDKVQDEP STLGNIMISR GPSKRISRKK RGDSMEKSGA KKKRCSANDE TALHGGSLGT  1020
NTETISDQSE NFNVHNKHEG DEFEEAPSTQ QYQQHKLQNV DMKLSSKKQK SDKRSSNLHE  1080
VCYEDNDLDC WLNIDTGDNA AIGNLDNSPQ GLDDEKAKSP GKLQGSKRKS SKGKASDDSL  1140
NGDKKLQKMN KKSISRKPNN GKINRQFRED YNEDNTLDNL LDVESGVEAT LGNLDKFPKE  1200
KTADVKVEPR GKRQSGKDDK RSSNFRGEDN DVDCWHAMDS GDNATTGNLD NNQQQRLEAV  1260
KLKSGGKSQS CKRKSSKGKT NDDPPDGDKK LQVVSTKSSS RKQKVDSINR QSREGPDEDN  1320
PVDCLPKDED EASRDNCHKV SEEQTDDVKV KSRVKTQTVK RKTSKRQAGD KAAKFSCDIE  1380
GCDMSFSTQQ DLLLHKRDIC PVKGCKKKFF CHKYLLQHRK VHMDERPLKC TFEDCKKTFK  1440
WPWAKTEHMR VHTGARPYKC KEPGCTQTFR FVSDFSRHKR KTGHSIDKKN KEST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-7073744353Transcription factor jumonji (Jmj) family protein
6ip4_A2e-7073744353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1391397RDKKKKD
29881003KKRGDSMEKSGAKKKR
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g39130.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238558.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7121e-162JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A0Q3PQC40.0A0A0Q3PQC4_BRADI; Uncharacterized protein
STRINGBRADI4G39130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Representative plantOGRP1475934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-151relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]