PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g37946.5.p
Common NameBRADI_4g37946
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 633aa    MW: 70965.1 Da    PI: 8.5464
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g37946.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3443.9e-1413103399
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       k +t+ + + ++ +v+p   ++++ggk   s t++le ++g+  +v +   k  +r+vl++GW+ Fv+ n+++e+ +++F+ +grs+   +v+
  Bradi4g37946.5.p  13 KFMTQMHGNFKDSMVIPEWIVNHFGGK--ISGTIKLEAPNGQIHDVGV--AKEMNRTVLQSGWEAFVDVNQIQENFSLMFRWIGRSCL--KVT 99 
                       6788888999999****9999777888..6779***************..**********************************9999..999 PP

                       EE-S CS
                B3  96 vfrk 99 
                       +f++
  Bradi4g37946.5.p 100 IFDA 103
                       9986 PP
2B330.75.4e-102223021193
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                        k+ +l + k++a+++   k++s+tl+l  e+++ W+ ++++r +++++ l    ++Fv++n L+egD ++F+ +   + ++++
  Bradi4g37946.5.p 222 KKTPMLAITKDYARAYFPHKNQSVTLKLP-ENSKNWRCRFCVRPGGRGHHLY--LSKFVHDNLLREGDLCLFQPMTGvKATKFT 302
                       5667899*********7666787666643.688*********9999999999..99*****************55332444333 PP
3B341.91.9e-13377469595
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..E CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelv 93 
                       l++s ++ +++lv++k +a++h  +  es+t+tl+ + g ++W  ++ +r++ ++yvl + W +F+++n+L+  D ++++   +g+ ++f+ +
  Bradi4g37946.5.p 377 LKSSVNGPHACLVISKGYATAHFPS--ESQTITLQLPGGkKKWHPRFYIRRGNSAYVLYGQWIDFARDNRLCKEDLCLLQpiIKGKgRRFTVM 467
                       45666778899***********744..6789*****99989******77999999*************************5333444555555 PP

                       EE CS
                B3  94 vk 95 
                       v+
  Bradi4g37946.5.p 468 VH 469
                       55 PP
4B337.25.1e-125566282299
                       H.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  22 faeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +a++h  +gk   +k    +  ++++W+vk+   +k+  ++ ++GW+eF  +n+L++gD ++F+l + ++  + v+++r+
  Bradi4g37946.5.p 556 HADRHlpDGK---EKVALCQAGWNKEWRVKM--HNKR--MLPGGGWREFTIDNRLQDGDLCLFELLKIEGLAMAVHIIRT 628
                       6666644222...33344456899*******..5554..7899*********************9988999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.98211104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-1712105IPR015300DNA-binding pseudobarrel domain
CDDcd100174.16E-1712102No hitNo description
PfamPF023621.7E-1213103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-1614104IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-414104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-10210294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-10211295IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.71212311IPR003340B3 DNA binding domain
SMARTSM010190.0018216311IPR003340B3 DNA binding domain
PfamPF023621.9E-8221306IPR003340B3 DNA binding domain
CDDcd100172.45E-8226308No hitNo description
Gene3DG3DSA:2.40.330.101.3E-14365468IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-16366470IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-15370469No hitNo description
SMARTSM010190.0032373474IPR003340B3 DNA binding domain
PROSITE profilePS508639.671373474IPR003340B3 DNA binding domain
PfamPF023626.4E-11377470IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-15528628IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-12529628IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.0E-6540629IPR003340B3 DNA binding domain
CDDcd100172.76E-11554627No hitNo description
PfamPF023621.1E-9555628IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884576629IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MSNPCECCKS KVKFMTQMHG NFKDSMVIPE WIVNHFGGKI SGTIKLEAPN GQIHDVGVAK  60
EMNRTVLQSG WEAFVDVNQI QENFSLMFRW IGRSCLKVTI FDANGEERIS CCAGMKHPTY  120
VEKASTNCAD ISSNSHDGTA QSSDSDGHCR EQGNKPAVES SCDEFSDYSP SESESMESDD  180
LRLSKDYVLS GRCYLTEEQE DEINAFVRKI KPEIPLLVVM MKKTPMLAIT KDYARAYFPH  240
KNQSVTLKLP ENSKNWRCRF CVRPGGRGHH LYLSKFVHDN LLREGDLCLF QPMTGVKATK  300
FTFMFHLLGR AGKADIDSNH GSFKKKKKFL TDHQETSSKI HYILSGRCQL DKEDEVGIEA  360
LIAELQPEIP LLVVRMLKSS VNGPHACLVI SKGYATAHFP SESQTITLQL PGGKKKWHPR  420
FYIRRGNSAY VLYGQWIDFA RDNRLCKEDL CLLQPIIKGK GRRFTVMVHL LPKARSTSRS  480
KGRDGVLGLN SGGTETSDDS NISGYVLLGS SARLTSAQES IVAEKVKSIQ SQAPIYVAAI  540
DKSNYSNSLD FGTKGHADRH LPDGKEKVAL CQAGWNKEWR VKMHNKRMLP GGGWREFTID  600
NRLQDGDLCL FELLKIEGLA MAVHIIRTEQ YS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g37946.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318791.10.0B3 domain-containing protein Os03g0620400 isoform X1
TrEMBLA0A2K2CT070.0A0A2K2CT07_BRADI; Uncharacterized protein
STRINGEMT181700.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-11B3 family protein