PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g35570.1.p
Common NameBRADI_4g35570, CBF1, LOC100830551
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 245aa    MW: 26340.8 Da    PI: 5.8835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g35570.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-174395155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      + y+GVr++   grWv+e+r+p ++g  +r +lg++ ta+ Aa+a++aa+++l+g
  Bradi4g35570.1.p 43 PVYRGVRRRGPAGRWVCEVRVPGKRG--QRLWLGTHLTADSAARAHDAAMLALRG 95
                      68*******************95544..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-124395IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-2544109IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1544108IPR016177DNA-binding domain
SMARTSM003802.4E-1644113IPR001471AP2/ERF domain
PROSITE profilePS5103220.3144107IPR001471AP2/ERF domain
CDDcd000184.02E-2045109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDAADSPSSS SSHEQHGAAC PPPAPPRPKR PAGRTKFKET RHPVYRGVRR RGPAGRWVCE  60
VRVPGKRGQR LWLGTHLTAD SAARAHDAAM LALRGPFSAT ACHLNFPDSA WLLAMPCVLP  120
SDLAAVRRAA LAAVADFQRR EVARGDATVP VVEDIASSAT ALPSYMDDAS SWAASFQPCE  180
IGNFDVPVGM FELDMAGEMD LGVYYADLAE GLLMEPPQMT PDTEACWEIG YYSHGGAEAT  240
LWNY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g35570.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ1804700.0JQ180470.1 Brachypodium distachyon CBF1 (CBF1), CBF2 (CBF2), CBF3 (CBF3), and CBF4 (CBF4) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238393.11e-179dehydration-responsive element-binding protein 1H
SwissprotA2Z3882e-51DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
SwissprotQ0J0902e-51DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBLH9C1H01e-178H9C1H0_BRADI; CBF1
STRINGBRADI4G35570.11e-179(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6456520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-19dehydration response element B1A
Publications ? help Back to Top
  1. Li C, et al.
    Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses.
    BMC Plant Biol., 2012. 12: p. 65
    [PMID:22569006]